-
Hi,
I wanted to try the efficiency of a chained peak detection and peak localization. With the same parameters, on the same recording I tried two pipelines (chained vs separated detection/localisatio…
-
-
1. Peaks and valleys determination
2. Thresholds used to classify them as peaks/valleys
3. Tabulate the number of peaks, high peaks (wet attractor), and low peak (dry attractor) values.
4. Example…
-
```
- Add "tracking mode" to settings:
"Contours": CONTOUR
"Contours with outlines": CONTOUR | OUTLINE
"Contours with all peaks": CONTOUR | OUTLINE | PEAK_OUTER
"Contours with inner peaks": CONTOUR |…
-
Hi,
I have encountered UROPA run error, where "Visualized summary output could not be created ...".
This is what I have done:
As an input, I have used ATAC-seq peak file generated by macs2 with …
-
```
- Add "tracking mode" to settings:
"Contours": CONTOUR
"Contours with outlines": CONTOUR | OUTLINE
"Contours with all peaks": CONTOUR | OUTLINE | PEAK_OUTER
"Contours with inner peaks": CONTOUR |…
-
Hi @taoliu ,
**Describe the problem**
```callpeak --nomodel -f BAMPE --keep-dup 1 -q 0.05 -B --SPMR -t TF.bam -c IgG.bam -n TF```
generate TF.narrowPeak files contain 6 rows.
```callpeak --…
-
Have shared the data on drive with @sahil21
Filenames don't have special characters in them
Using El Maven_v0.2.4
-
Project : iQueue
Job : Test
Env : Stg
Region : FXLabs/US_WEST_1
Result : fail
Status Code : 400
Headers : {Date=[Mon, 25 Jun 2018 22:37:27 GMT], Content-Type=[application/json], Co…
-
Hi @rietho and @sneumann ,
I optimized xcms parameters using QC files (40 files) that represented run across the 1000 samples. I used the optimized parameters to preprocess data using xcms and got pe…