rietho IPO issues - Githubissues

rietho / IPO

A Tool for automated Optimization of XCMS Parameters

http://bioconductor.org/packages/IPO/

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Can parameters obtained from IPO's grouping optimization be used in both the alignment and grouping steps using PeakGroupsParam during alignment?

#75 YUANMENG-1 opened 4 months ago
2
Error in resultIncreased(history) : No isotopes have been detected, peak picking not optimizable by IPO!

#74 v-v1150n opened 8 months ago
0
error during oprimisation

#73 samuelbertrand44 opened 1 year ago
3
Too much time for optimization!!

#72 arpita-007 opened 2 years ago
6
checks are failing due to mzData

#71 rietho closed 2 years ago
5
Fix/mz data removal

#70 sneumann closed 2 years ago
6
Build error due to removed mzData report

#69 sneumann closed 2 years ago
0
User manual for IPO

#68 HuanLab closed 2 years ago
0
sampleGroup error... I think.

#67 Phylloxera opened 4 years ago
0
Issues running IPO on cluster with 15 files

#66 adelabriere opened 4 years ago
2
definition of grouping optimization score leads to poor results in some cases

#65 tew42 closed 4 years ago
1
IPO parallelizing not working, large scale dataset hundreds to thousands of samples

#64 victorfrnak opened 5 years ago
3
Workers / Slaves numbers for IPO on clusters

#63 ThomasPouplin opened 5 years ago
0
std::bad_alloc error

#62 danagibbon opened 5 years ago
2
xcmsSetStatistic() may produce model with suboptimal results

#61 rickhelmus opened 6 years ago
2
Error in object@backend$getAllScanHeaderInfo()

#60 ghost opened 6 years ago
1
Determining the number of xcms runs and DoEs for an optimization run

#59 etrh opened 6 years ago
1
stop worker failed, Error in serialize, error writing to connection

#58 etrh opened 6 years ago
1
optimizeXcmsSet expects parameters that are not even used by and related to centWave

#57 etrh closed 6 years ago
2
IPO optimized parameter showed peak data insertion problem

#56 Titan100 opened 6 years ago
2
ways to improve IPO performance

#55 blueskypie opened 6 years ago
5
Chromatographic peak detection failed for all files

#54 ghost closed 6 years ago
3
Error when plotting

#53 sneumann closed 7 years ago
5
How to optimize the centWave parameter prefilter two values

#52 ljsjwly closed 7 years ago
2
Option to disable plotting

#51 rietho closed 7 years ago
0
Error with calcPPS function

#50 lauzikaite closed 7 years ago
11
Parallelisation issue (?)

#49 lauzikaite closed 7 years ago
11
Issue running optimizeXcmsSet() with CAMERA isotope peak detection on multiple files.

#48 crmclean closed 7 years ago
2
Last IPO version (1.7.5) before Bioconductor release

#47 sneumann closed 7 years ago
1
Step/increment issue

#46 Brainpiercing closed 7 years ago
3
DoE plotting error

#45 Mexxxx closed 7 years ago
3
nSlaves deprecated, update to BiocParallel

#44 jorainer closed 7 years ago
16
Error in .local(object, ...) : Dimensions of profile matrices do not match !

#43 mheiser-md closed 7 years ago
6
MacOSX: Different results for xcmsSet.centWave.mzdiff

#42 lecorguille closed 7 years ago
5
Update install guide

#41 mhische-md closed 8 years ago
1
Unloading snow namespace

#40 mheiser-md closed 8 years ago
2
Optimization time issue

#39 Titan100 closed 7 years ago
21
Design: return vales of optimizeXcmsSet() and optimizeRetGroup()

#38 sneumann opened 8 years ago
1
IPO error message for UseMethod("sendData")

#37 leichtle closed 8 years ago
3
optimizeRetGroup ignoring retcorMethod="loess"

#36 sneumann closed 8 years ago
5
Uses FORK instead of PSOCK R clusters on Linux/Mac

#35 pcm32 closed 8 years ago
7
Installing IPO error

#34 jjkellogg closed 8 years ago
2
Error "checkForRemoteErrors(val) : 2 nodes produced errors" when using IPO

#33 jamesrco closed 7 years ago
7
Unexpected problems with the netCDF and mzXML files

#32 Jiaqc closed 9 years ago
1
Problems installing IPO in R-3.2.2 version

#31 Jiaqc closed 7 years ago
0
Unable install any packages in R-3.2.2 version

#30 anupb08 closed 9 years ago
20
MakeCluster(nSlaves, type = "PSOCK")

#29 tobigithub closed 9 years ago
1
MakeCluster(nSlaves, type = "PSOCK")

#28 tobigithub closed 9 years ago
5
Unpredictive behaviour with library(Rmpi) installed

#27 tobigithub closed 9 years ago
2
Lipidomics set creates warnings about profile mode

#26 tobigithub closed 9 years ago
1