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- [x] is there anything obvious missing
- [x] are there any sub terms missing (e.g. plural versions, with a space and without a space, ...)
- [x] is the use of umbrella/sub terms consistent across t…
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Hi Thierry,
A few small bugs I've noticed with filter_rad() in interactive mode:
-Any filter that removes samples/individuals causes failure in the next filtering step:
```
Error: Column `MISS…
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AC:
- [x] Write information about datasets chosen into report draft
- [x] Put data in a place where we can use it for analysis
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Hello,
I am getting the error message: IndexError: list index out of range when I try to run mykrobe predict on our linux environment. When I run it on my Mac Book Pro it works fine. …
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Hi Thierry,
I just tried installing the radiator package. After successfully installing glue, Rtools3.5 and stringi, it fails when trying to install the actual radiator package with the following er…
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Am looking for ideas on how best to describe output of PHATE as applied to some CAR T-cell 10X genomics scRNAseq data I've got ahold of. Biological context is these cells are CAR T-cells after transfe…
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I try to convert a .vcf.gz file to tidy genomic data in Rstudio:
`eu_snps_1 file.exists("strata_eu.tsv")
[1] TRUE`
`> file.exists("UMBELLA_Erumb1_samples_gt_50pct_covered.recode.vcf.gz")
[1] T…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/VilainLab/nanotatoR
Confirm the following by edit…
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Hi there,
Any change you could provide an example of the format required for the popsFile in the popgenWindows.py script?
I have a simple .txt file with 2 columns and a header with Samples /t Popu…