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Hello,
Thanks for developing such a useful package! Using it a lot for my research and have it installed in conda with python v.3.10.12. Still a bit fresh to this, but learning! Currently trying t…
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Hi,
Could you help me to understand how QueryContainmentAni and MatchContainmentAni are calculated?
Given the use of exact kmer matches, I would assume that the ANI between a query kmer and a re…
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We have a working contig-level gather implementation in [charcoal](https://github.com/dib-lab/charcoal), but there are applications for this besides contamination detection and removal. It would be ne…
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I noticed that when clicking on the citation file in the repo ([CITATION.cff](https://github.com/sourmash-bio/sourmash/blob/latest/CITATION.cff)), the `version:` is set to 2.0.0.
Is this a pinned …
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a few notes for things to document, not necessarily comprehensively...
* what is sourmash for (research platform as well as functional piece of software)
* who are the current maintainers
* who d…
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Hello! I am working on replicating some (amazing) work from Taylor's [IBD project](https://www.biorxiv.org/content/10.1101/2022.06.30.498290v1.full).
I have signatures from `sourmash sketch dna` of…
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I've been digging into some `Storage` stuff, and thinking about:
* `SourmashSignature` and how we treat signatures and `MinHash` objects as 1:1
* how selectors on databases are really tightly tied…
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request sent privately:
>I am interested in finding strains of an bacteria (say E. Coli) in ~100 metagenomes. What’s the best way to do this?
Misc thoughts:
* suggest adopting a triage workflow…
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Several tests related to oxli code are currently disabled (via `@pytest.mark.known_failing`). These are scripts that, probably for demonstration purposes, have already been ported over to the future l…