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Things to add
[X ] volume calculation (i.e. cluster size)
[ ] atlas roi reading
[ X] subcortical component..
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Hello,
I notice that grayordinates includes both the surface and subcortical voxels.
Now I got some results on grayordinates, and I want to __spatially_ smooth_ the values using Gaussian kernels.
…
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Hello,
Just adding this forum post as a GitHub issue.
http://forums.ohdsi.org/t/problems-with-progressive-multifocal-leukoencephalopathy-mapping/1682
Thanks,
Ajit
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I was looking to show off MONDO browsing in the website, but am a bit hesitant because the highest-level groupings seem a bit too granular, inconsistent. Thoughts? @cmungall
https://monarchinitiat…
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Atlas sub-maxprob-thr0-1mm of HarvardOxford.tgz contains incorrect labels.
**1) Fetch** from http://www.nitrc.org/frs/download.php/7700/HarvardOxford.tgz
```
import numpy as np
import nibabel as…
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I have downloaded the full distribution of Lead-DBS from the website (www.lead-dbs.org) as well as from the 'necessary datafiles' link from the project front page. Both are missing the image dartelmni…
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Hello Mindboggle List,
I got MB started and was just looking at some volumetric data. Examining a few subjects, I noticed a fair bit of discrepancy between FS and ANTS volumetric labels (from the…
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From Tim Coalson
> The func2hcp.py script uses the -volume-parcel-resampling-generic command that we took out of our pipelines, in order to instead do cubic spline resampling, resolving an issue of…
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Hi, Jose. Thanks for your guide and I had run the example code successfully using the given data, but the result was not satisfactory. Here is the Testing result I got:
![given_data](https://user-ima…
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Hi,
After updating to R016 Prisma (VD13D) a base resolution lower than 64 is not supported on Multi-Band and Multi-Band Multi-Echo sequences.
Here are the original parameters before upgrade:
…