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I just discovered @cMadan's comprehensive list about open-access human anatomical MRI images: https://github.com/cMadan/openMorph
Would it make sense to go through this list and try to add missing …
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something is going wrong here
https://github.com/sammba-mri/sammba-mri/blob/master/sammba/registration/func.py#L309
that outputs a rotated and translated anatomical in comparison to what it is expec…
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Hey @stnava ,
Just making sure I didn't overlook something but I can't seem to find an ANTsR equivalent of ``PermuteFlipImageOrientationAxes``. If correct, would you welcome that in ANTsR or shoul…
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I am getting an error that I have copied the stack trace below. Approximately 90% of the routine runs fine but I am not sure what happens at the end with the recon-all.
(Also I am running as a user…
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@dorahermes thanks for the example. I have some questions:
Why is sub-01_acq-projected_locinfo.txt not part of the ub-01_acq-projected_loc.json file, e.g. as an info field?
Why is sub-01_acq-pro…
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Hello,
I have downloaded mriqc on a server using python3 with the work-around provided here https://github.com/poldracklab/mriqc/issues/470.
The server does not have docker so the python installatio…
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```python
from curvetracing import process_events
import nipype.interfaces.utility as niu
TR = 2.5
in_nvols = 420
event_log = 'sub-eddy_ses-20180222_task-curvetracing_run-02_events.tsv'
calc…
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In the Chang Lab, we often visualize data spatially on the surface of brain. To do this, we take the MRIs of each subject and output surface mesh data, which has two variables, vertices and edges. Ver…
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Dear experts,
I am working with MR spectroscopy datasets (single-voxel MR spectroscopy). The MR spectroscopy voxel is large cuboid VOI with arbitrary size and orientation.
1.
I would need to co…
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Example https://github.com/sammba-mri/sammba-mri/blob/master/examples/plot_register.py is too complicated and should be encampassed in one function that takes a list of paths to anatomical images and …