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TO-DO
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There is already `@Citation` annotation created for `BEASTObject`, to link the publication to the model and implementation.
I created `PackageCitations` to pull out all citations from installed pac…
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I've decided to consolidate all of the files that are currently not working into one list so it's easier to see. Will update as I retest and as they get fixed/deleted.
Seg Faults:
- [x] TestClade…
srwis updated
5 years ago
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Hi,
I'm attempting to use ANGSD to get the site frequency spectrum from a vcf file. The vcf file was generated by GATK's GenotypeGVCFs and subsequently hard-filtered for low quality variants. My is…
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On current master, on OS X (although I'm guessing it doesn't matter) I get:
```
python3 setup.py build_ext --inplace
running build_ext
building '_msprime' extension
clang -Wno-unused-result -Ws…
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lauranoges [Feb 26th at 5:28 PM]
@csmall @matsen I just discovered a pretty big issue today that may be my fault for not being attentive enough but: QA255.157-Vk seed is part of a clonal family tha…
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@rneher Where is the ancestral_reconstruction.py?
ghost updated
5 years ago
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**Submitting author:** @marekborowiec (Marek Borowiec)
**Repository:** https://github.com/marekborowiec/spruceup
**Version:** v2019.1.1
**Editor:** @csoneson
**Reviewers:** @iimog, @gavinmdouglas
**…
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Hi Jonathan,
I have two populations with heavy introgressions, which violates the assumption of the smcpp split estimation. With inference of local ancestry, I can mask the genomic regions that wer…
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Hello, I would like to ask you a question and I'd be very grateful if you could help me.
I have SNP info of an admixed population A with 3 ancestral populations (B,C,D). Using local ancestry infere…