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Hello,
I'm using CircCode, such a powerful tool, but I have problem, every files I used here are from your example.
When I run: python3 make_virtual_genomes.py -y config.yaml, the err is:
No. 1 l…
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**What is this request referring to?**
Addition of circular RNA under both ncRNA and mRNA. This was recently discussed at INSDC and will be added as a valid INSDC value.
**What is the name you wou…
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Hi,
I've been working on a set of samples using the differential expression analysis for biological replicates. All steps work fine until I get to using CIRI_DE_replicate, where I get the followin…
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Hi, Dr JAKOBI,
I download the FUCHS from github and using the install code you provided, however, when I use the command
" python setup.py install --user"
The process failed for there is lack of…
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https://mp.weixin.qq.com/s/VCRukFCQaagTF6GKu2DLgA
ixxmu updated
3 years ago
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Hi Simona,
Nice circular RNA study tool. I tried the package today. When I enter the command "check
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Dear author,
I found some more files than before based on 'human + HBV' genomes, they are **Chimeric.out.junction.circRNA** and **Chimeric.out.junction.circRNAmapped**.
What are they and whe…
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Hi! I have been trying to do some downstream analysis of my circRNAs, and reached as far as module 12 with it. This was as on Friday, 28th May. Now when I am using the same R script as the package sug…
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We’ve just started exploring CircMarker.
It’s mentioned in the README that it can support now genome-wide predictions.
We’re using a fasta file with all chromosomes included (primary assembly …
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Hi David,
First, thank you for your great tool. I'm wondering why the BS junction sequence do not match the acceptor / donor sequences from the circRNA sequence. This is the case as well with your ex…