dieterich-lab FUCHS issues

dieterich-lab / FUCHS

FUCHS - FUll circle CHaracterization from rna-Seq

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FUCHS 0.3.0 branch seems not to contain commit #afe7192

#25 HaraldWilhelmi closed 1 year ago
3
sys.meta_path is None

#24 jaanckae opened 1 year ago
3
Question: BED annotation input

#23 mumichae opened 2 years ago
0
Logic error? The program will miss one read for each junction

#22 Christina-hshi opened 3 years ago
1
Fuchs 0.3

#21 tjakobi closed 4 years ago
0
Negative length exons & systematic coordinate errors

#20 tgermade opened 4 years ago
2
where to find the bed6 annotation file

#19 sambhav2mishra opened 5 years ago
0
Cannot not find numpy when installing

#18 Rainkikiki closed 4 years ago
3
Merging parallel branch with master

#17 tjakobi closed 6 years ago
0
skip.exon.bed file empty

#16 CYZbasebio opened 7 years ago
0
strand in "sample.exon_counts.bed" file

#15 qindan2008 opened 7 years ago
0
how FUCHS circ handle multiple samples at the same time?

#14 qindan2008 closed 7 years ago
1
"refseq" and "ensembl" Annotation.bed file format

#13 qindan2008 closed 7 years ago
1
some issues with FUCHS

#12 CYZbasebio opened 7 years ago
2
guided_denovo_circle_structure_parallel - wrong path

#11 CDieterich closed 7 years ago
2
graphical representation is wrong

#10 FranziMe closed 7 years ago
0
bug in mate_status.txt output

#9 CDieterich closed 7 years ago
2
Optional FUCHS modules are not discussed

#8 CDieterich closed 4 years ago
0
guided_denovo vs denovo script

#7 CDieterich closed 7 years ago
6
Check for R dependency before program start

#6 CDieterich closed 4 years ago
2
Relative path handling

#5 CDieterich closed 7 years ago
0
Directories are not created and program exits

#4 CDieterich closed 7 years ago
1
summarized_coverage_profiles.R should make sure all dependencies are installed

#3 tjakobi closed 7 years ago
1
FUCHS is not compatible with bedtools > 2.24.0

#2 tjakobi closed 7 years ago
0
Problem with BED12 files in IGV

#1 CDieterich closed 7 years ago
0