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Dear heng, thanks for the fantastic tool. I have some questions, can I use minimap2 to align pair-end 150bp short reads to assembled contig of these short reads, how is the performance? Or do you hav…
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The reason multiple insert libraries are used is to strike a balance between long and short range information. Long-insert mate pair libraries are great at telling you two contigs are linked but doesn…
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This command consumed about 60G RAM. But it phased only 10Mb area. I still left about 2500Mb area to phase. how can I reduce the RAM when phasing a large cohort (~1200) of whole-genome sequencing data…
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We (or I) have created several failed releases because the large lerna publish cycle would fail in the middle of itself when uploading to npm
I think releasing through github actions or having a …
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My problem is that I am having difficulty obtaining a list of variants using bcftools mpileup and bcftools call with PacBio data. I do not have this problem with data of Illumina paired-end sequencing…
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Hey,
We only get a vcf file for tag genomes and SNP files for each genome in gt_results. Do you have any suggestions for making a SNP matrix of all genome?
Thanks!
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Hi @xcggates
Thanks for your beautiful code!
when I use MACS2 and Clipper to call peak, I follow the steps described in [vignettes](https://github.com/JSB-UCLA/Clipper/tree/master/vignettes)/C…
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Hello Sir,
I hope you are doing well.
I am trying to use genome scope in order to know the percentage repeat content of the genome. I am having a hard time understanding the output. Can you plea…
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The Websocket settings currently don't allow big enough transfers to move a genome sequence to the browser. However, that might not be the correct response. The issue may more be that we need to pro…
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