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How consistent is it?
This will drive the topic area selectors in the reports
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@adamhsparks @grunwald @zachary-foster
I went through my sample of 50 articles again and came up with this categorization specific to papers in plant disease-related journals. You may want to prop…
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In several data sources (ClinVar, OMIM, Orphanet), we use the RO_0002200 'has phenotype' relation for linking variants to diseases. This doesn’t seem right, and is not in line with the definition of '…
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Before we make the next release of Tripal v3, I would like to specify which content types we should have available by default. With Tripal v2 each content type required a new module, but for Tv3 ad…
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Problem: Genomic data for the same taxon ID have different annotation and assembly versions.
Solution: Add annotation and assembly versions to the Organism object in the core InterMine data model.…
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**[Original report](https://bitbucket.org/biobakery/metaphlan2/issue/13) by Clifford Beall (Bitbucket: [cliffbeall](https://bitbucket.org/cliffbeall), GitHub: [cliffbeall](https://github.com/cliffbeal…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/quon-titative-biology/scAlign
Confirm the followi…
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The link to the SIB Bioinformatics & Population Genomics course is broken, it needs to be updated or removed. I cannot find an updated link, does anyone have it?
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Hi Thierry,
I'm running missing_visualization on these data sets:
> dat1
/// GENIND OBJECT /////////
// 264 individuals; 12,091 loci; 24,182 alleles; size: 30 Mb
// Basic content
@t…
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Hi,
I'm struggling to get my numeric data to read in MVP.
I prepared the numeric format based on the instructions at https://github.com/XiaoleiLiuBio/MVP
It looks like this (Just a portion …