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--Hello,
i have running Control-FREEC on a single chromosome with those parameters:
freec -conf config_WGS.txt
############# config_WGS.txt ###################
[general]
##parameters chrLen…
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I analyzed 12 sets of paired end reads with CIRI-full pipeline and tried to run CIRI-vis on each of them. 11 samples worked fine but for the 12th sample, CIRI-vis generates the circRNA plots and list …
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Thinking of adding a sample contamination check into the pipeline to get an assessment on sample purity.
Will become an increasing issue for those playing in microbiome/host genomics. But also for …
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Additional command line options could help to manage DB without interface:
- [x] Import a VCF into an database
- [ ] Import a pedigree file
- [ ] Import a tags file
- [x] Query a database (VQL/SQL…
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Hi Marek,
Thank you for sharing your wonderful pipeline! MINTIE is working very well in local mode submitted to our queue through an interactive job.
We have had problems with the cluster imple…
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Hi there!
Thank you for all your work on this project! It has been so helpful.
While observing the file, I think I have found low severity UPPERCASES issues on lines 5. The commit that introduce…
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Sorry to bother, but for some reason I can not get miga to find my GPU.
Running ubuntu 20.04 with nvidia-cuda-toolkit 10.1.244
Perhaps it is something trivial such that I just have the wrong p…
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# Critical Assesment of Metagenome Interpretation (CAMI)
CAMI is an open challenge for meta-omic's programs where the developers of said programs test out their programs on multiple different dataset…
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Determined that `DATA-CA` program was mainly for clinical. Uploaded molecular data was to help visualization on dashboard.
A more comprehensive set is needed for workflow testing.
- [x] Make `Seq-…
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Il serait pertinent d'annoter les page espèces de GeoNature atlas avec des annotation sémantique de type[ Schema.org ](https://schema.org/) et [bioschema.org](https://bioschemas.org/)
Un exemple i…