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**Describe the bug**
rapids_singlecell.tl.umap will occasionally generate embeddings with spuriously large values (e.g., a small number of points that are very large).
Details: I start with a …
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- [x] [1. Scope out and define the new schema in single-cell-curation/schema.](https://czi.atlassian.net/wiki/spaces/SCI/pages/2967797841/How+to+run+a+schema+migration#1.-Scope-out-and-define-the-new-…
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# Need
We are currently using anndata==0.8.0. At the time of writing this ticket anndata is on 0.10.7. The longer we wait to upgrade the more difficult it will be.
Updating the version in the CLI …
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### Problems:
* Strange to have diffexp / computation in left sidebar with metadata
* Users cannot return to a selection once they've made it and changed it
* Differential expression selections do …
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Dear Authors,
Thank you so much for developing this tool. I tried to open_soma() from Europe servers, but I kept getting the following error. If I run open_soma() from US servers, I do not have the…
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### Need
The CAP team needs to know what CELLxGENE collections are ready to ingest. Managers need to know what datasets have been ingested into CAP.
### Approach
1. Define a CAP validation on sou…
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Our GHA's periodically fail due to network-level failures in fetching mirrors.json/requests.json, when access via the cellxgene-census R and/or Python packages. It is likely that other users see simi…
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As an HCA integration team member, I want to be able to incorporate DCP metadata into my integration analysis, even when I use only the count matrices.
Scripts for this project are uploaded [here](…
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#### Need
We need immediate feedback on the source datasets belonging to a source study when matching in CELLxGENE.
On add source study, when it matches by DOI immediately update the source datasets …
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Currently, we can only transfer from instances that run the same version. We need to replace `laminlabs/cellxgene` with a development instance so that we can keep tests passing.