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chanzuckerberg
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cellxgene-census
CZ CELLxGENE Discover Census
https://chanzuckerberg.github.io/cellxgene-census/
MIT License
88
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22
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Fix presence matrix calculation (and derived values)
#1320
ivirshup
opened
2 hours ago
1
tools/models/scvi docs adjustments
#1319
mlin
opened
18 hours ago
2
Start allowing more tissue_types
#1318
ivirshup
opened
4 days ago
1
Support numpy 2
#1317
jdblischak
opened
5 days ago
1
problems in installation
#1316
inestm28
closed
6 days ago
2
Bump aiohttp from 3.10.2 to 3.10.11 in /tools/cellxgene_census_builder
#1315
dependabot[bot]
opened
1 week ago
0
docs: update scvi readme with swap
#1314
ebezzi
closed
1 week ago
1
DoesNotExistError: 's3://cellxgene-census-public-us-west-2/cell-census/2023-12-15/soma/' does not exist
#1313
yabeykoon
opened
1 week ago
3
Running the geneformer example results in KeyError
#1312
ddemaeyer
opened
1 week ago
1
Cellxgene Data Discrepancy between cellxgene website and cellxgene_census
#1311
Feilijiang
closed
1 week ago
2
Add feature_type column to var
#1310
ivirshup
closed
1 week ago
1
Add arc-runners files
#1309
ebezzi
closed
2 weeks ago
2
Add domain handling to dataframe write code
#1308
ivirshup
closed
4 weeks ago
0
CI jobs sometimes die because Karpenter wants to move jobs
#1307
ivirshup
closed
2 weeks ago
1
CI jobs sometimes die because Karpenter wants to move jobs
#1306
ivirshup
closed
1 month ago
0
Specify the Census search space with an `obs_value_filter` parameter in `find_nearest_obs`
#1305
pablo-gar
opened
1 month ago
1
Add newly approved assays
#1304
ivirshup
closed
1 month ago
1
Census LTS update
#1303
cathystoli
opened
1 month ago
0
Add approved assays to accepted assay list
#1302
jahilton
closed
1 month ago
7
Which columns should be included in var?
#1301
ivirshup
closed
1 week ago
4
Update cellxgene schema version to 5.2.0
#1300
ivirshup
closed
1 month ago
1
NMF census model appears to not be available on the R side
#1299
hlmtran
closed
2 weeks ago
2
Add opengraph metadata for social previews
#1298
ivirshup
opened
1 month ago
1
Bring back misc deps for doc build
#1297
ivirshup
closed
1 month ago
1
Docs builder: Make sure copying happens from correct working directories
#1296
ivirshup
closed
1 month ago
1
Social previews for the docsite
#1295
ivirshup
opened
1 month ago
0
Static R docsite
#1294
ebezzi
closed
1 month ago
2
Stop linking release cycles of R and Python packages
#1293
ivirshup
closed
1 week ago
0
[Python] Correct docs on default behaviour for DataLoader no longer including soma_joinid
#1292
ivirshup
closed
1 month ago
1
Fix docs for data loaders
#1291
ivirshup
closed
1 month ago
1
[python] Pin against tiledbsoma 1.14.1
#1290
ivirshup
closed
1 month ago
1
Experiment Data Pipe doesn't return soma_joinids
#1289
yanwu2014
closed
1 month ago
2
Python CI process killed with tiledbsoma 1.14.1
#1288
ivirshup
closed
1 month ago
1
[python] Fix vector search import
#1287
ivirshup
closed
2 months ago
1
chore(docs): Add banner and newsletter signup (SCE-29)
#1286
kaloster
closed
1 month ago
3
open_soma error: The bucket you are attempting to access must be addressed using the specified endpoint.
#1285
ybukhman
closed
2 months ago
2
feature_dataset_presence_matrix should include genes with 0 counts
#1284
ebezzi
opened
2 months ago
3
Bug with get_all_available_embeddings
#1283
huguesva
closed
2 months ago
6
differential expression - memento
#1282
MatthiasBeyens
opened
2 months ago
2
Identical values reported for "var.nnz" and "var.n_measured_obs" for different datasets retrieved via get_anndata()
#1281
khughitt
opened
2 months ago
1
[python] Fix codecov uploads
#1280
ivirshup
closed
2 months ago
1
Troubleshoot codecov upload
#1279
ivirshup
closed
2 months ago
1
Prep 1.16.1
#1278
ivirshup
closed
2 months ago
0
[python] Fix `predict_obs_metadata` when number of neighbors isn't `10`
#1277
ivirshup
closed
2 months ago
0
Revert #1189 (relax min python version back to Python ≥3.9)
#1276
ryan-williams
closed
2 months ago
1
Bump R package version
#1275
ivirshup
closed
2 months ago
0
[R] Remove tiledb dependency for R package
#1274
ivirshup
opened
2 months ago
1
Try setting aws region for R checks
#1273
ivirshup
opened
2 months ago
0
[python] Fix mypy error
#1272
ivirshup
closed
2 months ago
0
Adding a dataset of `tissue_type = "organoid"` to Census scVI embedding
#1271
kavithakrishna1
opened
2 months ago
0
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