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chanzuckerberg
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cellxgene-census
CZ CELLxGENE Discover Census
https://chanzuckerberg.github.io/cellxgene-census/
MIT License
72
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18
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Can't fiind dataset in API with dataset_id from browser
#1175
mengerj
closed
4 weeks ago
4
[python] Update scvi pipeline for the June LTS training
#1173
ebezzi
closed
6 days ago
1
[python] Use pyproject.toml for doc env
#1172
ivirshup
closed
4 weeks ago
1
[docs] Update links to gget website and author email
#1171
lauraluebbert
closed
1 month ago
0
[python] Update docs for `get_obs`, `get_var`
#1170
ivirshup
closed
20 hours ago
1
[python] ExperimentDataPipe: configurable `method` (`nd.array`, `scipy.coo`, `scipy.csr`)
#1169
ryan-williams
opened
1 month ago
0
[python] Remove new indexer from hvg
#1168
ebezzi
closed
1 month ago
1
Identify tiledbsoma version that causes builder unit tests to fail
#1167
prathapsridharan
closed
1 month ago
2
[python] Make docs searchable
#1166
ivirshup
closed
1 month ago
2
Implement Census Builder Prototype
#1165
prathapsridharan
opened
1 month ago
1
Embeddings search experimental API
#1164
mlin
opened
1 month ago
3
[docs] Add cell guide notebook for queries on cell type descendants
#1163
pablo-gar
closed
1 month ago
2
[python] Reduce warnings during doc builds + fix broken links
#1162
ivirshup
closed
1 month ago
1
[docs] Remove newsletter banner
#1161
ebezzi
closed
1 month ago
1
report installed versions
#1160
ivirshup
closed
1 month ago
0
Prepare for 1.14.0 release
#1159
ebezzi
closed
1 month ago
1
[python] Don't kill all tests on failure
#1158
ivirshup
closed
1 month ago
1
Incorrect size of result when passing `obs_coords`
#1157
ivirshup
opened
1 month ago
4
[python] share census objects in tests for faster test time
#1156
ivirshup
closed
1 month ago
4
Embrace the __future__ of typing
#1155
ivirshup
opened
1 month ago
1
Bump requests from 2.31.0 to 2.32.0 in /tools/cellxgene_census_builder
#1154
dependabot[bot]
closed
1 month ago
0
[python] Progress bar for download_source_h5ad
#1153
ivirshup
closed
1 month ago
1
[python] Fix git-lfs issue when cloning Geneformer in other places
#1152
ebezzi
closed
1 month ago
1
[python] Add get_obs
#1151
ivirshup
closed
1 month ago
3
[python] Fix git-lfs issue when cloning Geneformer
#1150
ebezzi
closed
1 month ago
1
[python] Start move to {obs/var} specific arguments for get_anndata
#1149
ivirshup
closed
6 days ago
3
Add dev dependencies to pyproject.toml
#1148
ivirshup
opened
1 month ago
0
[ci] Allow R acceptance tests to run from a branch
#1147
ebezzi
opened
1 month ago
2
Consider adding implementing a data distribution sensitive shuffling algorithm for dataloader libraries
#1146
prathapsridharan
opened
1 month ago
4
vignette links broken
#1145
jahilton
opened
1 month ago
0
Create a step-by-step guide for releasing new embeddings/models
#1144
pablo-gar
opened
1 month ago
0
Update embedding notebooks with new models for LTS
#1143
pablo-gar
opened
1 month ago
0
Release Geneformer embeddings and model on LTS candidate
#1142
pablo-gar
opened
1 month ago
0
Train and release scVI on LTS candidate
#1141
pablo-gar
opened
1 month ago
0
Add "do not delete flag" to LTS candidate data build `20240520`
#1140
pablo-gar
closed
1 month ago
1
Publish Census LTS release, June 2024
#1139
pablo-gar
opened
1 month ago
0
[docs] Update geneformer notebook to latest API changes
#1138
pablo-gar
closed
1 month ago
0
[docs] update scvi notebook to use latest model
#1137
pablo-gar
closed
1 month ago
0
[R] Fix acceptance tests memory issue
#1136
ebezzi
closed
1 month ago
0
[python] Balance distributed partition size more evenly
#1135
atolopko-czi
opened
1 month ago
1
Add python 3.8/MacOS exclusion rule for dependency check workflow
#1134
ebezzi
closed
1 month ago
1
Add tests and error checking to custom encoders PR
#1133
pablo-gar
opened
1 month ago
0
Creating a Census object from inhouse h5ad projects (Discussion)
#1132
danishzmalik
opened
1 month ago
5
Prepare for 1.13.1 release
#1131
ebezzi
closed
1 month ago
0
[ci] Fix the LTS compat workflow
#1130
ebezzi
closed
1 month ago
1
[python] Fix pytorch imports
#1129
ebezzi
closed
1 month ago
1
[R] Fix R dependency workflow
#1128
ebezzi
closed
1 month ago
1
Make prototype of Census builder with support of Spatial data
#1127
pablo-gar
opened
1 month ago
0
[builder] Add ClientResponseError to the builder managed exceptions
#1126
ebezzi
closed
1 month ago
1
[docs] New embeddings notebook spellcheck
#1125
ebezzi
closed
1 month ago
1
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