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chanzuckerberg
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cellxgene-census
CZ CELLxGENE Discover Census
https://chanzuckerberg.github.io/cellxgene-census/
MIT License
72
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[docs] New embeddings notebook spellcheck
#1125
ebezzi
closed
2 months ago
1
[docs] Update embedding notebook
#1124
pablo-gar
closed
2 months ago
0
Vector indexing pipeline for Census embeddings
#1122
mlin
closed
2 weeks ago
4
3137 illegal hardware instruction (core dumped) python
#1121
Mnikley
opened
2 months ago
8
Make sparse tensors csr instead of coo when `return_sparse_X=True`
#1120
pablo-gar
opened
2 months ago
0
Fix ml.ExperimentDataPipe for Distributed Training
#1119
JulesGM
closed
1 week ago
11
[ci] Fix torch dependency issue and pause tests on Mac/Python3.8
#1118
ebezzi
closed
2 months ago
1
Update list of accepted assays and bump schema to 2.0.1
#1117
ebezzi
closed
1 month ago
1
[docs] Add development setup notes for Census API
#1111
prathapsridharan
closed
1 month ago
1
mistake
#1110
mmdanziger
closed
2 months ago
0
Add documentation to aid the developer on development and operations for census builder and api
#1109
prathapsridharan
opened
2 months ago
0
Census cell similarity search: finalize how to deploy TileDB vector indexes
#1116
mlin
opened
2 months ago
3
Census cell similarity search: experimental Python API for metadata prediction
#1115
mlin
opened
2 months ago
0
Census cell similarity search: experimental Python API for searching given AnnData
#1114
mlin
opened
2 months ago
2
Census cell similarity search: set TileDB-Vector-Search indexing parameters and characterize accuracy+perf
#1113
mlin
closed
2 weeks ago
0
Census cell similarity search: pipeline to build TileDB Vector Indexes of cell embeddings
#1112
mlin
closed
2 weeks ago
0
[python] Pass in the full context to open_experiment in pytorch loaders
#1108
ebezzi
opened
2 months ago
3
Work with Tiledb to produce a good design proposal for shape/reshape feature for Tiledb-SOMA
#1107
prathapsridharan
opened
2 months ago
0
Bump aiohttp from 3.9.3 to 3.9.4 in /tools/cellxgene_census_builder
#1106
dependabot[bot]
closed
1 month ago
3
Remove "EFO:0030080 - 10x transcription profiling" from the accepted assays of Census
#1105
pablo-gar
closed
1 month ago
1
[ci] Fix docsite pipeline
#1104
ebezzi
closed
2 months ago
1
[python] Shuffle multiple SOMA chunks
#1103
atolopko-czi
closed
1 month ago
3
[docs] fix mailto links in "what's new?" blog posts of doc page
#1102
pablo-gar
closed
2 months ago
0
2 Questions for the LTS Census Data Releases
#1101
zhan8855
closed
2 months ago
3
KeyError on download_source_h5ad with Valid Dataset ID in cellxgene_census
#1100
ubyndr
closed
2 months ago
2
Remove datasets from "HTAN VUMC" Collection from the blocklist
#1099
ebezzi
closed
2 months ago
1
[DO NOT MERGE] Test new GH runners
#1098
ebezzi
opened
2 months ago
1
New set of benchmarks for the profiler
#1097
beroy
closed
1 month ago
3
Get sample ID (not donor ID)
#1096
stemangiola
opened
2 months ago
4
feat(integration): integrate with geneformer
#1123
Bento007
opened
2 months ago
0
R long vectors not supported yet: memory.c:3888
#1095
CianMurphy
opened
3 months ago
1
[builder] cellxgene_ontology_guide integration
#1094
ebezzi
closed
2 months ago
3
Refine SOMA proposal for spatial support to enable Census product requirement and schema draft
#1093
pablo-gar
opened
3 months ago
0
Draft Census schema for support of Visium and Spatial data
#1092
pablo-gar
opened
3 months ago
9
[docs] Update emails in doc
#1091
ebezzi
closed
2 months ago
2
[docs] add 2024 header
#1090
pablo-gar
closed
3 months ago
1
[R] Embeddings API
#1089
ebezzi
opened
3 months ago
0
[docs] Add 2024 articles to docsite
#1088
pablo-gar
closed
3 months ago
0
Cannot pip install cellxgene-census in docker image for linux/arm64
#1087
ubyndr
closed
1 month ago
12
[docs] add news article for categoricals
#1086
pablo-gar
closed
3 months ago
1
[builder] additional unit tests for builder
#1085
bkmartinjr
closed
3 months ago
1
[misc] Remove MacOS support claim for census builder
#1084
prathapsridharan
closed
3 months ago
1
[python] temporarily skip geneformer test
#1083
ebezzi
closed
3 months ago
0
[docs] Add note to highlight the ability to download a full copy of Census
#1082
pablo-gar
opened
3 months ago
0
latest release cell metadata "obs" containing "dictionary" datatype in some columns
#1081
sunhuaiyu
closed
3 months ago
1
[misc] Prepare for 1.13.0 release
#1080
ebezzi
closed
3 months ago
0
[builder] cleanup chore
#1079
bkmartinjr
closed
3 months ago
1
[R] Fix acceptance tests via gc()
#1078
ebezzi
closed
3 months ago
0
[python] fix HVG unit test
#1077
bkmartinjr
closed
3 months ago
0
[builder] add unit test for float precision reduction
#1076
bkmartinjr
closed
3 months ago
0
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