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Hello
When I try to use MetAmos for processing of single .fastq files, the pipeline fails to link the file with single reads to `lib%d.seq` (**EXAMPLE 1**) and crashes subsequently, issuing a warnin…
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Attempting to install DartQC on the JCU HPC, where users lack 'sudo' privilege (needed for cd-hit). I've followed the instructions from the URL below:
https://github.com/weizhongli/cdhit/blob/mast…
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Dear Meren:
I have problems at anvio test.
Since my mac book got only 8G memory. I tried to install anvio both at Macbook and Linux cluster ( centos. readhat). I am hoping that I can try the clusterin…
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Hi,
I am trying to run PAPRICA on a linux server.
I have installed all the dependencies, but when I try to run ```./paprica-run.sh test.bacteria bacteria``` I get the following error:
```
pplacer…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/andreyshabalin/ramwas
Confirm the following by editing …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/plantarum/flowPloidyData
Confirm the following by editi…
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"Bioconductor (http://www.bioconductor.org/) is an open source, open development software project to provide tools for the analysis and comprehension of high-throughput genomic data. It is based prima…
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Hi, I installed metAMOS-1.5rc3 in our sever by using "python INSTALL.py core". Then I tried to run the test script of run_pipeline_test.sh. However, it was stuck at the postprocess step without any hi…
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The planning should provide an overview of all milestones.
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Hi,
I've installed MetAMOS and iMetAMOS on my linux box and tried to run the test pipleine (run_pipeline_test.sh) and got the following warnings and errors:
A few questions:
1) I HAVE definitely inst…