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PTN000054102 is currently adding "peptidyl-prolyl cis-trans isomerase activity" to D. melanogaster Bdbt (Q9VDE4).
But PMID:24210908 says that this is not a PPI (see quote below).
I've just made a "N…
sjm41 updated
4 years ago
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SPAC2G11.04
IBA with FBgn0086683 , PTN000328844 , locus:2028130
This one might be a panther problem.
The fly ortholog of SPAC2G11.04 isn't FBgn0086683 it's FBgn0051550
SPAC2G11.04 is a sp…
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I am seeing some odd behavior. I'm not sure it's a bug, but it's causing me some confusion.
I tried mapping the D. melanogaster gtf (dmel-all-r6.35.gtf) to a closely related Drosophila species. I wou…
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NeuroMynerva V2 aims at supporting connection to multiple servers and switching between datasets on a given server.
## Nomenclature
We need to standardize nomenclature
- Crossbar Server: `FBLSe…
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from PMID:32909946
In S. cerevisiae
Atg1 kinase activity is controlled by other Atg proteins. In S. cerevisiae, two scaffold proteins Atg13 and Atg17 are required for activating Atg1 kinase during…
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An example showing diff in REST API return values (JSON) between:
- "old" UAT env (installed/created 2018-05-11), **AND**
- [current SIT](https://sit-ag-bie.oztaxa.com) (installed 2018-08-15; SOLR b…
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Is the package suitable for drosophila melanogaster (dm3)? I tried to use the function make_hicexp and failed on the columns of chromosome (2L,2R here) , the name of chromosome will became “NA”.
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I would like to use this package to study some data generated from from Arabidopsis. However when I run `preparePromoterAnnotation()` I get:
`Error in extractSeqlevels(species, style) :
The sty…
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In some cases, when a node is grounded, entries appear in the Organism drop-down that are not organisms.
### To Reproduce
- Create and label node 'S'
- Select better match from Drosophila mela…
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Hi,
I just wanted to show a comparison using simulated PacBio CLR reads corrected with Illumina reads versus simulated HiFi reads for a Drosophila melanogaster genome assembly (haploid assembly "co…