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Hi :
I want to convert hicpro to hicexplorer , but there are two matrix (raw matrix and iced matrix) in the results of hicpro , but I'm not sure which matrix I should use . Could you give me some…
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Hi,
I am using hicFindEnrichedContacts to find loops, the script is:
hicFindEnrichedContacts -m ES_stage_chr1_2000000_25000000bp.cool -o loop.bed --method obs/exp
I got this:
INFO:numexpr.utils:No…
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Are you aware of example code / documentation / R package for reading cooler files into R? Better to ask before I go down this rabbit hole.
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Hello,
I am using the hicMergeLoops tool to merged the loop files generated at 10kb and 25kb. I was expecting to get the merged loop at 25kb, but after checking the loop file it is 10kb? I used this …
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Hi,
I am trying to install HiCExplorer 3.4.3 using conda, but failed. It installed 2.2 when I use "conda list" to see the packages.
hicexplorer 2.2 py36_0 bio…
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Hi,
I'm using hicPlotMatrix in a 236 GB RAM machine and it is being killed by the OS due to RAM usage.
My command is:
```
(hic) r78v10a07@instance-1:/data/hic$ hicPlotMatrix --matrix A_100bins…
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Hi,
I have run HiCExplorer to make Hi-C matrix. Now I want to convert that matrix into N x N format.
Do you know how to do that?
Best,
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Hi,
with my newest dataset I am getting the following error when I try to build the matrix.
```
Traceback (most recent call last):
File "/usr/local/bin/hicBuildMatrix", line 7, in
main(…
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Hi:
The scripts :`hicMergeTADbins -m test.h5 --domains test.dm --outFile ./result.txt`
The errors:
> ERROR:hicmatrix.HiCMatrix:Index error
Traceback (most recent call last):
File "/data1/liu…
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Hi, I'm getting this error when running hicCorrectMatrix:
wm06b-74e:~ mtegtmey$ hicCorrectMatrix correct --matrix ~/Desktop/0514d28_10000_norm.cool --correctionMethod KR --outFileName ~/Desktop/051…