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NearestNeighbors.jl implements KDtree. In loess, we primarily need to find the [points within the span of a given point](https://github.com/JuliaStats/Loess.jl/blob/1b34e352f3f1408111d87f2e1f7827b79ae…
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`bife` models are not properly supported. I would be happy to submit an extension but it looks like the methods already exist in `R/methods_bife.R`, they are just not working correctly. Below is a wor…
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Running:
```
jba manta/manta.tumor.svs.hg38.vcf cov.rds --field ratio --purity 0.7 --outdir $PWD/jabba --name test --cores 8 --gurobi TRUE
```
The cov.rds file contains the column `ratio` whic…
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Hi @billdenney , regarding why we cannot use `predcorrect()` before `binning()`, the ypc calculation uses `median(pred)` by bin
https://github.com/certara/tidyvpc/blob/8c7ed9c00ca9d60e19211d2731511b…
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How can you support Models of class "data.frame"
```r
library(DCchoice)
library(marginaleffects)
library(margins)
data(oohbsyn)
oohb1
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Is it possible to change the linewidth of lines in DCA plot?
When I add `geom_line(size = 2)`, the result is misleading (add vs. not add):
![image](https://github.com/ddsjoberg/dcurves/assets/…
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**Describe the issue**
I followed your suggestion, run the PureCN from scratch. The distribution of purity becomes better, but it is commented on by Noisy Segmentation in most of the samples. Could y…
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Hi, I am running PureCN on a set of variants combined from mutect2 and varscan2 results and using a panel of normals derived from 1000G exon capture samples. Running PureCN has produced a set of war…
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If I write the model_fn as shown in the documentation then no matter what I try it won't use the default hyper parameter and instead gives an error.
```
library(cvms)
library(dplyr)
library(grou…
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Hi, Thank you for the wonderful tool.
I noticed that the detection power for sparse data such as 10x is very low.
Imputation improved the stability, but I want to avoid using imputation if possible …