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Dear hadge authors,
thanks again for your help in advance!
I am running the genetic demultiplexing pipeline for multiple samples, with a sample sheet modelled after the example you provided.
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Users should be able to download a CSV copy of whatever is displayed in the Studies and Associations tables. This should be possible on all search UI pages (Trait, Publication etc.)
Bug: the button…
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**What is this request referring to?**
biallelic inactivation
**What is the name you would like SO to give the term?**
biallelic_inactivation
**What is the definition that you would like for t…
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Hi,
I utilized exomePeak2 for peak detection in RNA samples and observed that many methylated regions corresponded to introns. This finding surprised me since I did not specify the mode argument, a…
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Fanconia anemia complementation group M
(this might be present but I can't see all search results in the drop down/ Also tried OLS)
Child of Fanconi anemia (MONDO:0019391)
def
Any Fanc…
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Hello,
Recently a bunch of variably niche uses have appeared where going more granular than barcode level is desirable - pulling apart the donor composition of the read space/count matrix would be …
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See also #154 - Variant Ranking / Prioritisation
Sarah raised an issue https://github.com/SACGF/variantgrid_com/issues/12
Background
In some cases it is not possible to reduce variants for investigat…
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Referring to Ensembl/VEP_plugins#638, it is found in `spliceai_scores.masked.snv.hg38.vcf.gz` that there are some variants having different scores (even they are having the same gene symbol), e.g.:
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This log says a user made a comment but there are no comments on the entity. https://civicdb.org/events/genes/52/summary/variants/621/summary/evidence/1582/talk/log
Deletes should remove all activi…
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I'm running VIVA in Google Colab. Julia is installed as well as the VIVA package, but I can't get it to save a visualization without crashing. Here is my command:
viva -f test_output.vcf -t Default…