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Working on cent OS 6.
I installed anaconda3-4.1.1 through pyenv.
Now when I am not in anaconda calling functions contained in anaconda will cause an error:
```
$ clear
pyenv: clear: command not…
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Hello!
I am having issues running the "transdecoder_hmmer" step.
Do you know how to regenerate the hmmr DB files?
It appears they exist, but the .h3i file is empty:
-rw-r--rw- 1 root roo…
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Good day,
I have a couple of questions regarding the use of the "--samples_file " option.
I have a set of plant paired-end RNA-seq samples which I am trying to use for a de-novo transcriptome & …
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Hi
i have about 20,000+ genes needs to be annotated, it is nucleotide sequence, so i using the command mode '--itype metagenome'.
and i get the results. but i found only 14,000+ genes are annota…
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**I'm attempting to use HpcGridRunner to speed up a couple commands as part my TransDecoder pipeline. I tested my blastp command on its own and it takes between 5 and 6 hours (with 16 threads). I want…
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**Hi, I recently posted this issue on the HpcGridRunner page, but I see that there hasn't been an issue there in a few years. Just in case that page is no longer being updated, I wanted to post it her…
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**Input**
funannotate train -i $input -o $outdir --left $rnaLeft --right $rnaRight --stranded $stranded
**Error**
I am getting this error:
`Error, cmd: TransDecoder.Predict -t IC0001_sorted_ma…
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Hello,
I get this error
when runninf TransDecoder.Predict
`seqlogo module not found
`
The output *.pep file is produced anyway, is it harmless?
ghost updated
3 years ago
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Hi I am using rnaQuast 1.5.2 version to run
`rnaQUAST.py \
--threads 8 \
--transcripts trinity_K32.Trinity.fasta \
--reference trinity_combine.fasta.transdecoder.cds \
--gtf trinity_combine…
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Hello!
I have a question regarding Mikado: I have a set of novel lncRNAs generated through StringTie and want to merge them with the current NONCODE annotation. However, during the Mikado Tutorial …