issues
search
PalMuc
/
TransPi
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
Other
26
stars
14
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
issue of onlyAnn mode
#58
huawen-poppy
opened
5 months ago
0
Can I inform the direction of sequencing?
#57
katiacapel
opened
1 year ago
1
Fail to download uniprot_metazoa_33208.fasta
#56
dppss90008
closed
1 year ago
4
line 8: insilico_read_normalization.pl: command not found
#55
Rahimlou
opened
1 year ago
5
Error executing process > 'transdecoder_predict
#54
AlexGaithuma
closed
1 year ago
1
TransPi on HPC failing to pull singularity image
#53
claumer
opened
1 year ago
3
Uniprot Metazoan database not downloaded due to changes in UniProt REST API
#52
IdoBar
opened
1 year ago
2
Missing transpi_env.yml
#51
roscampbell
opened
1 year ago
2
Trinotate preparation step in Precheck script silently fails with missing Perl module
#50
IdoBar
opened
1 year ago
0
Operator `into` has been deprecated -- it's not available in DSL2 syntax
#49
SowmyaPulapet
opened
1 year ago
0
problems running full analysis (--all option) and evigene's script
#48
BravoScarleth
opened
2 years ago
0
Process requirement exceed available memory
#47
1riyu
opened
2 years ago
0
Unexpected run time, Trinity/salmon
#46
peterdfields
opened
2 years ago
1
Process fastp (AC422_S687_S14_L001_R) terminated with an error exit status (1)
#45
1riyu
closed
2 years ago
0
Signal P Compatibility Error?
#44
andypaige772
opened
2 years ago
2
Transdecoder cannot be found
#43
dbscjjm
opened
2 years ago
0
Process `fastp (Ccelos_S1_L001)` terminated with an error exit status (127)
#42
RNiloP
closed
2 years ago
1
Error Running Full Analysis: Process `fastp (1_R1)` terminated with an error exit status (255)
#41
andypaige772
opened
2 years ago
5
KEGG warn message
#40
vruggieri
opened
2 years ago
3
Error in rRNAfilter and sortmerna
#39
dpaz-corals
opened
2 years ago
0
Error: No module named 'busco'
#38
gabrielnsil
closed
6 months ago
4
precheck not installing software
#37
hcliedtke
closed
2 years ago
2
When using singularity, busco step fails when it cannot find database
#36
laninsky
opened
2 years ago
2
rnaspades step dies with "AttributeError: module 'collections' has no attribute 'Hashable'"
#35
laninsky
closed
2 years ago
4
rnaquast conda error
#34
kathrinannaotte
opened
2 years ago
4
Single-end reads
#33
kathrinannaotte
opened
2 years ago
3
Error in process busco4_dist
#32
ghost
opened
2 years ago
3
Certificate check in BUSCO not working
#31
rivera10
closed
2 years ago
0
Error in process Trinotate.
#30
ghost
opened
2 years ago
4
Dev
#29
rivera10
closed
2 years ago
0
Installation Issue (file yml?)
#28
francesconardi
closed
2 years ago
12
Multiple taxid for database download
#27
rivera10
opened
2 years ago
0
github update 4 days ago of TransPi.nf
#26
dbajpp0
opened
2 years ago
1
error at TransPi_Report_Ind.Rmd
#25
dbajpp0
opened
2 years ago
1
Using several databases
#24
dbajpp0
closed
2 years ago
1
Running onlyEvi
#23
andypaige772
opened
2 years ago
1
error in Trinity
#22
dbajpp0
closed
2 years ago
4
TransPi Single End Reads?
#21
andypaige772
closed
2 years ago
1
Java issue
#20
brittonstrickland
closed
2 years ago
5
Problem with --onlyAnn ?
#19
pmoulos
opened
3 years ago
3
Unknown error
#18
kazumaxneo
closed
3 years ago
3
Mulled container libbz2.so.1 shared libraries
#17
rivera10
closed
3 years ago
1
PR for TransPi v1.1.0
#16
rivera10
closed
3 years ago
0
no perl in cointainer
#15
rsuchecki
closed
3 years ago
5
precheck issues
#14
rsuchecki
closed
3 years ago
3
Error executing process > 'normalize_reads', RAM required 150GB
#13
jcoludar
closed
3 years ago
6
Issue finding busco when running Transpi with slurm / sbatch
#12
infinity01
closed
3 years ago
24
Combine processes that are shared between various analysis mode
#11
rivera10
closed
3 years ago
1
User DB option
#10
rivera10
closed
3 years ago
1
Error related to BUSCO
#9
gushiro
closed
3 years ago
2
Next