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I have written a new fast medium/diffuse area chip-seq caller in Python. It uses a binning strategy and one of the files it produces contains the island counts:
```
Chromosome Bin Chip1 Chip2 Input1 …
ghost updated
8 years ago
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@antgonza from your recent email it looks like this column is required, so we should update the documentation and the constants for EBI so the system checks for this column.
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- biological uses outside of the group: http://www.ncbi.nlm.nih.gov/sites/myncbi/1ruvipqAmaMkN/collections/48107393/public/
- tools building on khmer concepts: http://www.ncbi.nlm.nih.gov/sites/myncbi…
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Building this package using the new system of running mvn package instead of mvn compile and mvn bundle:bundle takes around an hour on my machine, which is too long for a development environment. For…
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Importing Entity meta data with hundreds of string attributes fails, because meta data is persisted in MySQL and MySQL has a maximum row size of 64K and a max of 4K cols per table.
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![screen shot 2015-05-22 at 15 18 30](https://cloud.githubusercontent.com/assets/1523838/7771196/dea1b836-0095-11e5-94da-b383a3ba9179.png)
(Did I just find the easter egg?)
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This is using 2.1.8.2 from the testtoolshed.
I got the following input parameters:
```
Input Parameter Value Note for rerun
Specify a factor name Infection
Specify a factor level Virus
Co…
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- [x] evaluate that we are meeting overall load performance, we are doing 2 actions (write only) / want about 3 / sec: should still be fine, since they were 100% write operations and we are going to 2…
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Currently, the `Dataset` type is poorly specified, and included in `reads.avdl`. We have some comments like
```
TODO: Reads and variants both want to have datasets. Are they the same object?
```
Th…
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why i use node `node --trace-gc`
root:localhost:~ # node --trace-gc
[50926] 91 ms: Scavenge 2.0 (37.5) -> 1.7 (37.5) MB, 0.7 ms [allocation failure].
[50926] 92 ms: Scavenge 2.0 (37.5) …