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curation link
https://canto.phi-base.org/curs/59484877a87d5786
Author contacted PHI-base and requested article to be curated.
I have had a go at curating this paper into PHI-Canto and added quer…
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Add a link to the ClinVar site from the ClinVar track label.
Ideally, link to the current gene/transcript/region if possible.
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Hi
I am trying to fit some protein AA variant data into the model and Baylors documents. I can make a protein simple allele document from our data but I am not certain I can always give the correct A…
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Welcome to the Scout user meeting @9:00-10:30 am!
However, due to the current situation we will aim to host this on zoom.
Location: https://ki-se.zoom.us/j/68072958794
Please help us fill th…
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Tag use cases:
1. Alerts (e.g. new publication, new ClinVar entry, time for re-evaluation, etc) Auto-tags added by VCI
- New ClinVar entry
- Triggered by: new ClinVar entry for …
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We want to support to write the *n* most pathogenic variants into a tabular output format, using a separator character provided via CLI.
ielis updated
3 years ago
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on the landscape page
inodb updated
3 years ago
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Dear PoisonAlien
I have a question regarding tcgaCompare(). In tcga_cohort.txt.gz, I see a table of mutation counts for each sample. How are they calculated?
Looking at the original maf, I guess t…
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#### What analysis module should be updated and why?
[tp53_nf1_score](https://github.com/AlexsLemonade/OpenPBTA-analysis/tree/master/analyses/tp53_nf1_score) was never fully completed because of …
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colorectal cancer, hereditary nonpolyposis, type 5 (MONDO:0013710)
should have the parent
MONDO:0005575 | colorectal cancer
(or maybe the parentage should be via Lynch syndrome which is alre…