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Hello,
Thank you for developing those fancy variant callers.
We conducted short-read RNA sequencing, and since we do not have a control sample, we are planning to call variants using the DeepSom…
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# Problem Space
Create discrete set of standard concepts to encapsulate disease "status" observations over time. Likely the majority of these observations will come from notes and consequentially b…
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The definition of the `ADM.Sample.general_sample_pathology` element suggests that the subject of the observation here is the anatomic source of the specimen, not the specimen itself (what type of tiss…
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https://github.com/uclahs-cds/pipeline-align-DNA/blob/76c63a162c81b26bc1aaf714bbd35f03c491579b/main.nf#L71
`Library`, `sample` and `lane` are not sufficient to identify unique read groups. The sa…
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> Beyond sample curation and basic pathologic characterization, the digitized H&E-stained images of TCGA samples remain underutilized. To highlight this resource, we present mappings of tumor-infiltra…
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![image](https://user-images.githubusercontent.com/79499756/144780924-a1800fe1-147a-4e36-88c5-a1c29c22d044.png)
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When I excute TCGAanalyze_DEA(), followed error message comes out:
Error in getBM(attributes = attributes, filters = c("ensembl_gene_id"), :
Query ERROR: caught BioMart::Exception::Database: E…
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Thank you for your excellent work!
I run this code on my own dataset about bladder tumor but I get very poor results. I guess the reason may be that my dataset is too small, resulting in overfittin…
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Some tools can fail if weird ways and succeed when restarted.
Where should the knowledge go?
Here is a `bwa-mem`:
```
[M::main_mem] read 2400000 sequences (240000000 bp)...
*** Error in `bwa': free(…
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**Is your feature request related to a problem? Please describe.**
Currently labelstudio only allows for [instance-segmentation](https://paperswithcode.com/task/instance-segmentation) with brushlabel…