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uclahs-cds
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pipeline-align-DNA
Nextflow pipeline to align paired DNA FASTQs and sort, mark duplicates, and index resulting alignment
https://uclahs-cds.github.io/pipeline-align-DNA/
GNU General Public License v2.0
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Bump external/nextflow-config from `a4e99e0` to `23b7b4e` in the pipeline-submodules group
#332
dependabot[bot]
opened
3 weeks ago
0
Add method to dump params object
#331
j2salmingo
closed
2 months ago
2
Bump external/nextflow-modules from `537da32` to `1cfa9fa` in the pipeline-submodules group
#330
dependabot[bot]
closed
1 month ago
4
Apply `methods.setup_process_afterscript()` for all processes
#329
yashpatel6
opened
3 months ago
0
Add methods setup process afterscript
#328
j2salmingo
closed
3 months ago
4
Bump the pipeline-submodules group across 1 directory with 2 updates
#327
dependabot[bot]
closed
3 months ago
1
Bump the pipeline-submodules group with 2 updates
#326
dependabot[bot]
closed
3 months ago
2
Group submodules with non-standard names
#325
nwiltsie
closed
3 months ago
0
Bump external/nextflow-modules from `ef40c10` to `537da32`
#324
dependabot[bot]
closed
3 months ago
1
Bump external/nextflow-config from `bc3f67e` to `2127286`
#323
dependabot[bot]
closed
3 months ago
1
Update dependabot to group common submodules
#322
nwiltsie
closed
3 months ago
0
Use `methods.setup_process_afterscript()` for process logs
#321
nwiltsie
closed
3 months ago
1
Mask version number in config tests
#320
nwiltsie
closed
3 months ago
0
Bump external/nextflow-config from `bc3f67e` to `be1eaf5`
#319
dependabot[bot]
closed
3 months ago
1
Bump external/nextflow-config from `f3448ac` to `bc3f67e`
#318
dependabot[bot]
closed
4 months ago
2
Bump external/nextflow-modules from `9db08f0` to `ef40c10`
#317
dependabot[bot]
closed
4 months ago
1
Bump external/nextflow-config from `f3448ac` to `e703579`
#316
dependabot[bot]
closed
4 months ago
1
sort BWA-MEM output directly avoiding intermediate write step
#315
sorelfitzgibbon
opened
4 months ago
0
Release `v10.1.0`
#314
yashpatel6
closed
4 months ago
3
Bump external/nextflow-modules from `9db08f0` to `4597ebc`
#313
dependabot[bot]
closed
4 months ago
1
Bump external/nextflow-config from `f3448ac` to `795384d`
#312
dependabot[bot]
closed
4 months ago
1
Upgrade to latest static analysis Action
#311
nwiltsie
closed
5 months ago
0
Bump external/nextflow-config from `f3448ac` to `af6a606`
#310
dependabot[bot]
closed
4 months ago
1
Fix README consistency
#309
j2salmingo
closed
5 months ago
0
Potentially serious problem with read group definitions
#308
sorelfitzgibbon
opened
5 months ago
5
README Consistency
#307
yashpatel6
closed
5 months ago
0
Update repository description to match standard
#306
nwiltsie
opened
5 months ago
0
Implement refactored Nextflow test workflows
#305
nwiltsie
closed
5 months ago
0
Re-enable testing workflow after breaking changes
#304
nwiltsie
closed
5 months ago
0
Update README.md
#303
j2salmingo
closed
5 months ago
1
Update Docker Images
#302
j2salmingo
closed
5 months ago
6
Release `10.0.0`
#301
yashpatel6
closed
6 months ago
1
Add methods.setup_docker_cpus()
#300
j2salmingo
closed
6 months ago
0
Bump external/nextflow-config from `da8e990` to `f3448ac`
#299
dependabot[bot]
closed
6 months ago
4
Add Nextflow configuration regression test Action and case
#298
nwiltsie
closed
7 months ago
0
Missing call to methods.setup_docker_cpus()
#297
nwiltsie
closed
6 months ago
0
Add action to generate documentation
#296
nwiltsie
closed
7 months ago
0
Add PlantUML flow diagram
#295
nwiltsie
closed
6 months ago
1
Bump external/nextflow-config from `da8e990` to `3ec7186`
#294
dependabot[bot]
closed
6 months ago
1
BAM Filename standardization for alignment pipelines
#293
yashpatel6
opened
8 months ago
0
Release `v10.0.0-rc.1`
#291
yashpatel6
closed
8 months ago
2
Bump external/nextflow-config from `1960eaa` to `da8e990`
#290
dependabot[bot]
closed
8 months ago
1
Bump external/nextflow-modules from `b0b2798` to `9db08f0`
#289
dependabot[bot]
closed
8 months ago
0
Remove duplicated methods
#288
nwiltsie
closed
9 months ago
0
Bump external/nextflow-config from `1960eaa` to `7e10f2c`
#287
dependabot[bot]
closed
8 months ago
1
Fix tests
#286
yashpatel6
closed
9 months ago
0
NFTest cases fail due to schema validation errors
#285
nwiltsie
closed
9 months ago
2
Bump external/nextflow-config from `c77aeca` to `1960eaa`
#284
dependabot[bot]
closed
9 months ago
1
Bump external/nextflow-modules from `4bc4336` to `b0b2798`
#283
dependabot[bot]
closed
9 months ago
2
Enable dependabot to keep submodules up-to-date
#282
nwiltsie
closed
9 months ago
0
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