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See https://gitlab.com/i5k_Workspace/workspace_roadmap/-/wikis/Adding-an-organism-CWL-update for full description of each task (requires gitlab login)
- assembly accession number: GCF_015345945.1
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Dragen has released new reference genome files and recommends using these for Dragenv3.9 and onwards https://sapac.illumina.com/science/genomics-research/articles/dragen-demystifying-reference-genomes…
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```
(py374) tss1@bio-PowerEdge-T640:~/SJARACNe$ sjaracne local -e ./test_data/inputs/BRCA100.exp -g ./test_data/inputs/tf.txt -n 2 -o ./test_data/outputs/cwl/cwltool/SJARACNE_out.final
INFO:root:tes…
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Hi, I am sorry for bothering you again with the empty output file issue. I really like this method and would like to apply it to my own RNA-seq data.
I actually ran the example command provided in …
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## Description
https://github.com/athenarc/whole-exome-seq/blob/main/workflows/Whole_Exome-Seq.cwl fails to visualize
## Expected Behavior
**Description**
[//]: # (A short description of the feature you are proposing…
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**Context**
It was pointed out that Getting Started with Docker does not have much information on choosing an existing Docker. In other words, to get people using Dockstore as a contributor, we are gi…
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Following up on https://github.com/ga4gh/dockstore/issues/1049
Let's make sure that tool registry schema is compatible with Singularity, in particular I think this means the following although @vsoch…
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In GitLab by @jberlin on Oct 13, 2022, 13:02
Working path for the deployment of the new release of the Autosubmit GUI:
**Pre-Staging**
- [x] Update documentation for GUI and API in the wiki or read…
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As we can see in [CWL Command Line Tool Description](https://www.commonwl.org/v1.0/CommandLineTool.html), several `CWL` workflows allow certain secondary files to be added alongside the primary files.…