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umccr
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cwl-ica
A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide
MIT License
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TS implementation of dragen instrument run fastq to ora pipeline
#553
alexiswl
closed
9 hours ago
0
[GitHub Actions] Images and configuration commits for release umccrise-pipeline__2.3.1--1__20240820075836
#552
github-actions[bot]
closed
2 days ago
0
[GitHub Actions] Images and configuration commits for release dragen-somatic-with-germline-pipeline__4.2.4__20240803080024
#551
github-actions[bot]
closed
2 weeks ago
0
[GitHub Actions] Images and configuration commits for release dragen-alignment-pipeline__4.2.4__20240803074610
#550
github-actions[bot]
closed
2 weeks ago
0
[GitHub Actions] Images and configuration commits for release dragen-transcriptome-pipeline__4.2.4__20240803074622
#549
github-actions[bot]
closed
2 weeks ago
0
Qualimap should use scratch directory if it exists, otherwise resort to tmp
#548
alexiswl
closed
2 weeks ago
0
[GitHub Actions] Images and configuration commits for release dragen-alignment-pipeline__4.2.4__20240801063352
#547
github-actions[bot]
closed
3 weeks ago
0
[GitHub Actions] Images and configuration commits for release dragen-somatic-with-germline-pipeline__4.2.4__20240801063441
#546
github-actions[bot]
closed
3 weeks ago
0
[GitHub Actions] Images and configuration commits for release dragen-transcriptome-pipeline__4.2.4__20240801063424
#545
github-actions[bot]
closed
3 weeks ago
0
Create instrument run transfer pipeline
#544
alexiswl
closed
3 weeks ago
1
Remove tmpdir option in qualimap
#543
alexiswl
closed
3 weeks ago
0
Add cram input functionality to dragen-somatic-with-germline pipeline
#542
alexiswl
closed
3 weeks ago
0
Use int over ** or Math.pow expression for tmpdirMin requirements
#541
alexiswl
closed
3 weeks ago
0
Convert utf-8 characters to ascii
#540
alexiswl
closed
3 weeks ago
1
Allow cram inputs into dragen somatic with germline pipeline
#539
alexiswl
closed
3 weeks ago
0
Qualimap running out of temp space on ICAv2
#538
alexiswl
closed
3 weeks ago
0
Clean up non-ascii characters in dragen docs
#537
alexiswl
closed
3 weeks ago
0
OOM Error for TN runs on ICAV2
#536
alexiswl
closed
3 weeks ago
0
Add cram input option to samtools fastq pipeline
#535
alexiswl
closed
3 weeks ago
1
Add gencode annotation to production bundles
#534
alexiswl
closed
1 month ago
0
[GitHub Actions] Images and configuration commits for release dragen-transcriptome-pipeline__4.2.4__20240708054448
#533
github-actions[bot]
closed
1 month ago
0
[GitHub Actions] Images and configuration commits for release dragen-alignment-pipeline__4.2.4__20240708034912
#532
github-actions[bot]
closed
1 month ago
0
Add gencode annotation dataset and add to wgts and wts-tumor bunches
#531
alexiswl
closed
1 month ago
0
Update RNAsum prod
#530
skanwal
closed
1 month ago
0
Initialise RNAsum 1.1.0
#529
skanwal
closed
1 month ago
0
[GitHub Actions] Images and configuration commits for release umccrise-pipeline__2.3.1--1__20240627233816
#528
github-actions[bot]
closed
1 month ago
0
[GitHub Actions] Images and configuration commits for release rnasum-pipeline__1.0.0__20240627060107
#527
github-actions[bot]
closed
1 month ago
0
[GitHub Actions] Images and configuration commits for release umccrise-pipeline__2.3.1--1__20240627060050
#526
github-actions[bot]
closed
1 month ago
0
[GitHub Actions] Images and configuration commits for release dragen-somatic-with-germline-pipeline__4.2.4__20240627054304
#525
github-actions[bot]
closed
1 month ago
0
[GitHub Actions] Images and configuration commits for release rnasum-pipeline__1.0.0__20240627054519
#524
github-actions[bot]
closed
1 month ago
0
[GitHub Actions] Images and configuration commits for release umccrise-pipeline__2.3.1--1__20240627054449
#523
github-actions[bot]
closed
1 month ago
0
[GitHub Actions] Images and configuration commits for release dragen-transcriptome-pipeline__4.2.4__20240627052945
#522
github-actions[bot]
closed
1 month ago
0
[GitHub Actions] Images and configuration commits for release dragen-alignment-pipeline__4.2.4__20240627051848
#521
github-actions[bot]
closed
1 month ago
0
[GitHub Actions] Images and configuration commits for release bclconvert-interop-qc__1.3.1--1.21__20240627051309
#520
github-actions[bot]
closed
1 month ago
0
[GitHub Actions] Images and configuration commits for release dragen-transcriptome-pipeline__4.2.4__20240627041605
#519
github-actions[bot]
closed
1 month ago
0
[GitHub Actions] Images and configuration commits for release dragen-transcriptome-pipeline__4.2.4__20240627040250
#518
github-actions[bot]
closed
1 month ago
0
[GitHub Actions] Images and configuration commits for release dragen-somatic-with-germline-pipeline__4.2.4__20240627035115
#517
github-actions[bot]
closed
1 month ago
0
[GitHub Actions] Images and configuration commits for release dragen-alignment-pipeline__4.2.4__20240627030935
#516
github-actions[bot]
closed
1 month ago
0
[GitHub Actions] Images and configuration commits for release bclconvert-interop-qc__1.3.1--1.21__20240627030521
#515
github-actions[bot]
closed
1 month ago
0
[GitHub Actions] Images and configuration commits for release bclconvert-interop-qc__1.3.1--1.21__20240627011541
#514
github-actions[bot]
closed
1 month ago
0
[GitHub Actions] Images and configuration commits for release dragen-alignment-pipeline__4.2.4__20240626104741
#513
github-actions[bot]
closed
1 month ago
0
Images and configuration commits for release bclconvert-interop-qc__1.3.1--1.21__20240626083949
#512
github-actions[bot]
closed
1 month ago
0
Images and configuration commits for release bclconvert-interop-qc__1.3.1--1.21__20240626082710
#511
github-actions[bot]
closed
1 month ago
0
Images and configuration commits for release bclconvert-interop-qc__1.3.1--1.21__20240626053918
#510
github-actions[bot]
closed
1 month ago
0
Try fix GITHUB_WORKSPACE directory to add as a safe directory
#509
alexiswl
closed
1 month ago
0
Hardcode user to 'ubuntu'
#508
alexiswl
closed
1 month ago
0
New base docker image already comes with non-root user (ubuntu)
#507
alexiswl
closed
1 month ago
0
Added validation and reference datasets for wgs and wts
#506
alexiswl
closed
1 month ago
1
Create rnasum and umccrise single-step workflows
#505
alexiswl
closed
1 month ago
0
Bugfix, as per the 2.25 release notes, tmpdirmin must be a requirement
#504
alexiswl
closed
1 month ago
1
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