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umccr
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cwl-ica
A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide
MIT License
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[GitHub Actions] Images and configuration commits for release dragen-instrument-run-fastq-to-ora-pipeline__4.2.4__20241122070556
#605
github-actions[bot]
opened
3 days ago
0
Bump cross-spawn from 7.0.3 to 7.0.6
#604
dependabot[bot]
opened
4 days ago
0
Added ora reference option to dragen transcriptome workflow
#603
alexiswl
closed
3 days ago
0
[GitHub Actions] Images and configuration commits for release bclconvert-interop-qc__1.3.1--1.25.2__20241120234352
#602
github-actions[bot]
closed
4 days ago
0
Add ora-reference tar to WTS workflow
#601
alexiswl
closed
3 days ago
0
Create a new bclconvert interop qc workflow with the new multiqc version
#600
alexiswl
closed
5 days ago
0
[GitHub Actions] Images and configuration commits for release dragen-instrument-run-fastq-to-ora-pipeline__4.2.4__20241120224050
#599
github-actions[bot]
closed
5 days ago
0
Update generate md5sum raw to run in parallel
#598
alexiswl
closed
5 days ago
0
Upgrade bclconvert interop qc to 1.25.1
#597
alexiswl
closed
5 days ago
1
[GitHub Actions] Images and configuration commits for release bclconvert-interop-qc__1.3.1--1.21__20241119001529
#596
github-actions[bot]
closed
5 days ago
0
Added hg38 genome size to multiqc cl config
#595
alexiswl
closed
6 days ago
0
Add genome size to multiqc cl_config for bclconvert interop-qc step
#594
alexiswl
closed
6 days ago
1
[GitHub Actions] Images and configuration commits for release dragen-somatic-with-germline-pipeline__4.3.6__20241115073817
#593
github-actions[bot]
closed
5 days ago
0
[GitHub Actions] Images and configuration commits for release dragen-instrument-run-fastq-to-ora-pipeline__4.2.4__20241115064819
#592
github-actions[bot]
closed
1 week ago
0
Bash var replace uses // which the typescript expression handler mist…
#591
alexiswl
closed
1 week ago
0
[GitHub Actions] Images and configuration commits for release dragen-somatic-with-germline-pipeline__4.3.6__20241115045341
#590
github-actions[bot]
closed
1 week ago
0
Fix dragen germline docker image for version 4.3.6
#589
alexiswl
closed
1 week ago
1
[GitHub Actions] Images and configuration commits for release dragen-instrument-run-fastq-to-ora-pipeline__4.2.4__20241115044412
#588
github-actions[bot]
closed
1 week ago
0
Generate md5sums for raw fastq inputs, not gzipped inputs
#587
alexiswl
closed
1 week ago
0
[GitHub Actions] Images and configuration commits for release dragen-somatic-with-germline-pipeline__4.2.4__20241114110541
#586
github-actions[bot]
closed
1 week ago
0
Make ora reference tar optional in workflow
#585
alexiswl
closed
1 week ago
0
[GitHub Actions] Images and configuration commits for release dragen-somatic-with-germline-pipeline__4.2.4__20241114104619
#584
github-actions[bot]
closed
1 week ago
0
Added the ora reference tar option to the dragen dna workflow
#583
alexiswl
closed
1 week ago
0
ORA inputs to workflows (TN) require a --ora-reference input
#582
alexiswl
closed
1 week ago
1
Add mrjd caller to the dragen germline tool
#581
minw2828
opened
1 week ago
1
mrjd utility
#580
minw2828
opened
1 week ago
2
[GitHub Actions] Images and configuration commits for release rnasum-pipeline__1.1.5__20241112044604
#579
github-actions[bot]
closed
1 week ago
0
Input Streaming
#578
minw2828
opened
1 week ago
3
SpiceAI Nirvana
#577
minw2828
opened
2 weeks ago
3
Initialise RNAsum v1.1.5
#576
skanwal
closed
1 week ago
4
[GitHub Actions] Images and configuration commits for release dragen-somatic-with-germline-pipeline__4.3.6__20241107061820
#575
github-actions[bot]
closed
2 weeks ago
0
[GitHub Actions] Images and configuration commits for release dragen-somatic-with-germline-pipeline__4.2.4__20241107061831
#574
github-actions[bot]
closed
2 weeks ago
0
Allow enabling split cnv by germline and somatic
#573
alexiswl
closed
2 weeks ago
0
[GitHub Actions] Images and configuration commits for release dragen-alignment-pipeline__4.3.6__20241106102650
#572
github-actions[bot]
closed
2 weeks ago
0
[GitHub Actions] Images and configuration commits for release dragen-transcriptome-pipeline__4.3.6__20241106102659
#571
github-actions[bot]
closed
2 weeks ago
0
[GitHub Actions] Images and configuration commits for release dragen-somatic-with-germline-pipeline__4.3.6__20241106102705
#570
github-actions[bot]
closed
2 weeks ago
0
[GitHub Actions] Images and configuration commits for release dragen-germline-pipeline__4.3.6__20241106102657
#569
github-actions[bot]
closed
2 weeks ago
0
Initialised dragen v4.3.6 workflows and v10 r4 datasets
#568
alexiswl
closed
2 weeks ago
4
[GitHub Actions] Images and configuration commits for release dragen-instrument-run-fastq-to-ora-pipeline__4.2.4__20241030041958
#567
github-actions[bot]
closed
3 weeks ago
0
Ora updates to include file sizes
#566
alexiswl
closed
3 weeks ago
0
Germline params update
#565
skanwal
closed
4 weeks ago
3
Revisit BCLConvert pipeline
#564
alexiswl
closed
2 months ago
3
Enhancement/improve ora pipeline
#563
alexiswl
closed
2 months ago
0
Bump micromatch from 4.0.5 to 4.0.8 in /expressions/get-bam-file-from-directory/1.0.1/typescript-expressions
#562
dependabot[bot]
opened
2 months ago
0
[GitHub Actions] Images and configuration commits for release rnasum-pipeline__1.1.0__20240901053225
#561
github-actions[bot]
closed
3 weeks ago
0
Create rnasum v1.1.0 pipeline
#560
alexiswl
closed
2 months ago
0
[GitHub Actions] Images and configuration commits for release dragen-transcriptome-pipeline__4.2.4__20240830041834
#559
github-actions[bot]
closed
3 weeks ago
0
[GitHub Actions] Images and configuration commits for release dragen-alignment-pipeline__4.2.4__20240830041127
#558
github-actions[bot]
closed
3 weeks ago
0
[GitHub Actions] Images and configuration commits for release dragen-somatic-with-germline-pipeline__4.2.4__20240830041201
#557
github-actions[bot]
closed
3 weeks ago
0
[GitHub Actions] Images and configuration commits for release dragen-wts-qc-pipeline__4.2.4__20240830041140
#556
github-actions[bot]
closed
3 weeks ago
0
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