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Test examples, tutorial code, and other repos -- M1, claustrum -- (if possible?)
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One of the issues I found when testing on Travis ( #37), and also when running Netpyne scripts remotely was that matplotlib was required, and that some graphical elements were initialised leading to e…
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Just a thought -- maybe instead of framework.py, you could use relative imports in **init**.py to achieve the same result? Then instead of e.g.
`import framework as f`
you could have something like
`i…
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Neuron allows you to set diam & L & then add pt3d points. Netpyne should allow only one or the other, and probably generate pt3d points if diam & L are used.
This is an example of the inconsistency …
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Similar to #130, if some of gnabar/ena/gl/ge are left out when setting on mech = hh, Netpyne should fill in the defaults, so any are accessible with e.g. secs.soma.mechs.hh.gnabar.
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Easy to code - if have all mechanisms (and NetPyne does) - /u/samn/hpcda/plfp.pyx - this works with network in single pass
http://www.scholarpedia.org/article/Local_field_potential#The_simplest_model…
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I sometimes separate simulation (sim.py) and simulation-data-reading code (simdat.py) - that way I don't have to load the whole sim to read sim data. However, to properly analyze simulation data, cert…
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The mod directory has moved, to the documentation folder.
Install instructions should be updated to make it easier to find and compile these to get the HybridTut_run.py example to run. Or alternative…
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It would be good to be able to install the package for use in any other python scripts. The steps for this are usually:
- [x] move main python scripts to sub folder named netpyne
- [x] move examples t…