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**Background**
**Note** requires completion of #20
On the date of model input data processing, we want to save some metadata about the current nextclade SARS-COV-2 dataset (i.e., the most current d…
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Hi again, I wanted to check if there was an easy way to do this with ORFik before writing something...
Let's say I am searching for ORFs in novel transcripts, but my novel transcript encodes a know…
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**With conda**
I am installing it within a conda environment using Python 3.6. When I try to install rnasamba with conda it tells me there is an illegal hardware operation.
`CONDA_SUBDIR=osx-64 …
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### Subject
[Flow] for any util, flow Makefile, or flow script issues.
### Describe the bug
https://github.com/The-OpenROAD-Project/OpenROAD-flow-scripts/blob/master/flow/designs/nangate45/mempool_…
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Hello again,
I closed the previous issue I was having as I feel we resolved this - the program ran now after I did a first assembly step to reduce the complexity of a full MGS file of raw data.
No…
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I recently started using riboviz to analyze some published ribosome profiling data. It worked very well, thank you very much for all of your work! Running the program on the University of Chicago clus…
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Hello,
I'm coming back to pLM-BLAST after leaving it for a while. I really like the approach and wanted to see what improvements had been been made since October 2023. I'm still hoping to apply it…
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### Describe the bug
This is a relatively new problem, used to work up until recently.
untar https://drive.google.com/file/d/1bDdfO-mr-abcCHUAktWgKzGhbZK6KqpS/view?usp=sharing
```
$ ./run-…
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Hi,
I ran EVM on 3 different gff files (resulting from braker, genomethreader and stringtie).
For evaluating annotations , I ran a BUSCO analysis on the merging fasta files deriving from the pre…
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This ticket is for starting documentation to allow external collaborators to ingest their data sources. This ticket was inspired by Xenbase contacting us requesting help with documentation for the co…