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Hi, Jason and Chris,
using LAshow -c, I get some alignments like this:
2,880,776 8,851,350 n [ 0..13,078] x [10,484..23,199](14 trace pts)
```
7697
A ----…
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I see daligner processes running:
daligner -v -t16 -H12000 -e0.7 -s1000 raw_reads.3 raw_reads.1 raw_reads.2 raw_reads.3
Where are these "files" raw_reads.3 raw_reads.1 raw_reads.2 ?
I'll bet dalign…
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when executing the following according to falcon_manual.md
git clone https://github.com/pb-jchin/pypeFLOW.git
cd pypeFLOW
python setup.py install
cd ..
git clone https://github.com/PacificBioscience…
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Hi, Jason and Chris,
I am getting this error:
fasta2DB: File preads_norm.fasta is already in database preads.db
You are about to overwrite the current partition settings. This
will invalidate any t…
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Working with Nanopore dataset.
```
daligner -M10 -d lambda.1 lambda.1
```
database seems fine:
```
>more lambda.db
files = 1
1131 lambda.pp m000000_000000_00000_c1898213712391273
block…
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Hi,
I've seen the your excellent presentation at London Calling and now want to run the nanocorrect pipeline on MinION data from a yeast strain.
Installation wasn't a problem and DALIGNER runs fine an…
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These are problems I'm having with the downloaded master version (I haven't made any changes yet):
1) if one of the jobs failes, fc_run.py will crash. Is this expected behavior? The crash has a tr…
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Ubuntu 14.10 install error
```
$ make
gcc -O3 -Wall -Wextra -fno-strict-aliasing -o daligner daligner.c filter.c align.c DB.c QV.c -lpthread -lm
daligner.c: In function ‘Merge_Size’:
daligner.c:233:2…
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During abyss-map ABySS 1.9.0. Happened twice in a row.
```
for k in 71; do
abyss-pe -C k$k np=40 k=$k name=Mya$k l=25 n=5 \
lib='pe1 pe2' mp1_l=25 mp2_l=25 \
mp='mp1 mp2' long='long1 lo…
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Hi, Jason,
When Falcon starts running the LA4Falcon | fc_consensus.py jobs, is there any way of determining how many are left to go (or how many total)?
You had pointed me to run_jobs.sh but that …