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another small step towards python3 print
Component: **python3**
Author: **Frédéric Chapoton**
Branch/Commit: **[`6560523`](https://github.com/sagemath/sagetrac-mirror/commit/65605237eaa95ee67fddd…
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I discovered that SPAdes will not output a contigs.fasta file if one of the K-mer searches fails, even if the other K-mer searches were successful:
```
spades.py --12 gene002_interleaved.fasta -o tes…
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A user is reporting a problem with both master and v2.1.0rc3 on their cluster system. The failure signature is a hang in ```MPI_Finalize``` when running any MPI program, including hello_c.c from exam…
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I'm having difficulties building the index for my yeast variation graph.
I constructed the graph from a multi-sample vcf with a max node size of 100.
./vg construct -r data/SGD_2010.fasta -v data/SG…
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The code below gives:
```
An internal error has occurred. Please report this as a bug.
Location of the error: src/full\Agda\TypeChecking\Errors.hs:807
```
``` agda
data _≡_ {A : Set} (x : A) : A → S…
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Hello,
when I compile gatb-core with clang, several potential errors are reported. I think that they are real errors. See this log:
```
In file included from /Users/karel/github/metang/proc/main.cpp…
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Problem is in ographBin:
```
DSK created 32 partitions
[Iterating DSK partitions ] 0 % elapsed: 0 min 0 sec remaining: 0 min 0 sec
Partition 0 has 1518 kmers
Iterated 151…
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Hi Gene,
When I use daligner align Pacbio to the DeBruijn Graph from Illumina Reads, where need more sensitive alignments cover graph path, But I found some graph edge is missing, my script is "…
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```
When working on a programming problem, we have:
> let plus (m : Nat)(n : Nat) : Nat
Let there be plus.
\ m : Nat ->
\ n : Nat ->
Programming: < plus^1 m n : Nat >
This "plus^1" is a nuisance.
`…
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Improving the word complexity functions by
- caching palindromic_lacunas_study
- caching suffix_tree
- caching suffix_trie
- allowing factor_set to take an integer as input
- adding rauzy_graph func…