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Hi, we are running some FEP validation tests using BSS from [this paper](https://pubs.acs.org/doi/10.1021/ja512751q). While some ligand pairs run fine, some can't be set up without allow_ring_breaking…
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Check when completed:
* [x] CBS (do not, see comment Rampal below)
* [x] CCP (do not, see comment Rampal below)
* [x] CEP (do not, see comment Rampal below)
Done|Model|Simulate|Likelihood
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Hey, It's been a while :)
I had an idea: why shouldn't we create some chapters about how to reproduce simple mechanic with code? Like how to handle a simple update loop to start with, and then to a…
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Siesta (https://launchpad.net/siesta) is an open source application for electronic structure calculations and ab initio molecular dynamics simulations.
The following internal error is produced by t…
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**[Original report](https://bitbucket.org/glotzer/hoomd-blue/issue/138) by Jens Glaser (Bitbucket: [jens_glaser](https://bitbucket.org/jens_glaser), GitHub: [jglaser](https://github.com/jglaser)).**
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Hello, I'm very interested in your StatSTEM, but I received the following errors when I started to load an image (.txt) :
Error using dlmread (line 147)
Mismatch between file and format character ve…
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I'm currently working on the SOMD molecular dynamics driver that will be part of the BioSimSpace.Process package. (This is separate to the SOMD free energy driver.) I've run into a few issues that I'l…
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@mostafa-razavi I think it will be easier to have a separate issue for each of the reviewers sections
The method presented by the authors to is relying on compressibility factors (Z=PV/RT) obtained…
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This is a list of the simulations we need to run
Put a * next to high priority tasks
Put your initials next to a task that you are currently working on
# Saturation viscosity
# New list of c…
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**[Original report](https://bitbucket.org/glotzer/hoomd-blue/issue/87) by Michael Howard (Bitbucket: [mphoward](https://bitbucket.org/mphoward), GitHub: [mphoward](https://github.com/mphoward)).**
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