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richelbilderbeek
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pirouette
R package that estimates the error BEAST2 makes from a given phylogeny
GNU General Public License v3.0
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pirouette cleans up too much?
#433
richelbilderbeek
opened
10 months ago
0
Fix CRAN issues
#432
richelbilderbeek
closed
11 months ago
1
Fix CRAN issues
#431
richelbilderbeek
closed
1 year ago
1
Use feast to do DNA sequence simulation
#430
richelbilderbeek
closed
1 year ago
1
Fix CRAN Windows build
#429
richelbilderbeek
closed
1 year ago
1
Update nodeSub::sim_dual_linked
#428
richelbilderbeek
closed
3 years ago
1
Let all pirouette examples use 'create_exemplary_dd_tree'
#427
richelbilderbeek
closed
4 years ago
1
Prepare version for pirouette article
#426
richelbilderbeek
closed
4 years ago
2
'create_exemplary_dd_tree' must match all pirouette examples code
#425
richelbilderbeek
closed
4 years ago
1
Fix pir_plot
#424
richelbilderbeek
closed
4 years ago
1
Check that values from files are correctly classified
#423
richelbilderbeek
closed
4 years ago
1
Fix facet title
#422
richelbilderbeek
closed
4 years ago
2
Use correct number of bins
#421
richelbilderbeek
closed
4 years ago
1
Reduce waste in pir_plots
#420
richelbilderbeek
closed
4 years ago
3
Improve speed of pir_plot_from_files
#419
richelbilderbeek
closed
4 years ago
4
aa
#418
Giappo
closed
4 years ago
0
aaa
#417
Giappo
closed
4 years ago
0
Lose dependency upon becosys
#416
richelbilderbeek
closed
4 years ago
1
Develop
#415
Giappo
closed
4 years ago
0
Creating an exemplary DD tree
#414
richelbilderbeek
closed
4 years ago
1
Develop
#413
Giappo
closed
4 years ago
0
Giovanni
#412
Giappo
closed
4 years ago
0
create_std_pir_params is slow
#411
Giappo
closed
4 years ago
12
Develop
#410
Giappo
closed
4 years ago
0
Develop
#409
Giappo
closed
4 years ago
0
Why is `create_std_pir_paramses` slow?
#408
richelbilderbeek
closed
4 years ago
1
'pir_params$twinning_params$twin_evidence_filename' must be NA if there is no evidences estimated
#407
richelbilderbeek
closed
4 years ago
2
'create_pir_params_twin' obsolete?
#406
richelbilderbeek
closed
4 years ago
2
'check_pir_params' must stop when there are no candidate models, yet there is a 'pir_params$evidence_filename'
#405
richelbilderbeek
closed
4 years ago
1
'pir_params$evidence_filename' absent in 'get_pir_params_filenames'
#404
richelbilderbeek
closed
4 years ago
2
Add 'pir_rename_to_std' to create standard names
#403
richelbilderbeek
closed
4 years ago
1
'check_experiments' does not detect duplicate error filenames
#402
richelbilderbeek
closed
4 years ago
2
Giovanni
#401
Giappo
closed
4 years ago
0
Cache folder name on Windows?
#400
richelbilderbeek
closed
4 years ago
4
Develop
#399
Giappo
closed
4 years ago
0
Add 'renum_rng_seeds'
#398
richelbilderbeek
closed
4 years ago
0
'init_pir_params' must replace '$(tree)' by filename that has the same path as the other files
#397
richelbilderbeek
closed
4 years ago
1
'get_pir_params_filenames' results differ between 'flat' and 'oldskool'
#396
richelbilderbeek
closed
4 years ago
0
'get_pir_params_filenames' does not return all files
#395
richelbilderbeek
closed
4 years ago
1
Write 'pir_rename'
#394
richelbilderbeek
closed
4 years ago
0
Develop
#393
Giappo
closed
4 years ago
0
Richel
#392
Giappo
closed
4 years ago
0
Remove geiger
#391
Giappo
closed
4 years ago
1
Add 'create_all_bd_experiments'
#390
richelbilderbeek
closed
4 years ago
1
Write pir_run_distribution
#389
Giappo
closed
4 years ago
6
Why does 'create_dd_tree' pick a tree from the best 5% percentile?
#388
richelbilderbeek
closed
4 years ago
1
Develop
#387
Giappo
closed
4 years ago
0
fixed pir_runs + implemented collect_pir_outs
#386
Giappo
closed
4 years ago
0
Giovanni
#385
Giappo
closed
4 years ago
0
Develop
#384
Giappo
closed
4 years ago
0
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