-
Many file formats for search engine results, i.e. peptide/protein identification (ID) data, don't (necessarily) contain retention time (RT) information. Since this information is critical for many Ope…
-
Hello,
I have been trying to install using maven and yet keep getting errors from dependencies. Is there any instruction I can follow for a successful installation?
Many thanks,
Segun
-
The retention time information in mzid is optional, but can be read from the original mzML when converting to idXML. This feature is still missing, see https://github.com/OpenMS/OpenMS/issues/1409#iss…
-
new terms:
----------
[Term]
id: MS:1001868
name: q-value for peptides
def: "Peptide identification confidence metric q-value." [PSI:PI]
xref: value-type:xsd:double "The allowed value-type for this CV…
-
MzTab MzIdentML should contain this information so we should export it.
I think this would fit well into PeptideIndexer.
@cbielow can you estimate how much work it would be to integrate it?
-
After importing some data from MSGF+ and Comet into PeptideShaker, I realized that for MS-GF+ I didn't have any peptides with a N-terminal K possessing both a N-terminal TMT and a sidechain TMT label …
-
On April 1, 2015 X!Tandem PILEDRIVER [1] was released. It includes support for mzIdentML and MSNumPress. If necessary, the XTandemAdapter should to be adapted. All X!Tandem parameters should be availa…
-
Hi I'm attempting to use the output from PeptideShaker (after a SearchGUI data search) to generate a spectral library for Data Independent Acquisition (DIA) analysis. However I am unable to convert th…
-
```
Hi dev team, and thank you for your X!Tandem parser.
I am using your lib indirectly throught the mzidentml-lib, where I reported a
bug (https://code.google.com/p/mzidentml-lib/issues/detail?id=1…
-
http://ftp.mi.fu-berlin.de/pub/OpenMS/release2.0-documentation/html/structOpenMS_1_1ProteinIdentification_1_1SearchParameters.html