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Hi - I'm running MSGF+ through OpenMS and I'm facing a persistent error that No peptides were matched to decoys in my database.
When I run my script, a revCat.fasta file is generated, and when I insp…
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Greetings,
I am having a hard time understanding what you are trying to achieve with this CMake code (main list file):
set(INSTALL_PLUGIN_SUBDIR plugins CACHE PATH "Installation subdirectory und…
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Greetings,
in my quest to better understand the logic behind the build system and the source tree structure I would like to know what are the functions of the following directories:
$(top_src)/…
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![image](https://github.com/OpenMS/OpenMS-docs/assets/5803621/b743bd83-af26-49ba-baaa-5df412bc3f3d)
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`cdef extern` gives Cython access to existing C/C++ libraries. To provide Python-level access generally requires the user to write a wrapper in Cython. For functions and enums Cython can automatically…
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- [x] (Update pwiz in thirdparty) -> not done
- [x] (Update pwiz in conda recipe) -> not done
- [ ] Check requirements of pwiz (ALL .NET and VCRedists). IMHO just .NET4. @timosachsenberg double-che…
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Hello, and thank you in advance for any nudges, help or discussion.
I am trying to run alignment on three large Proteomics datasets using Obiwarp. They're each about 800 Mb. I am fairly familiar wi…
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For some users a MySQL database might be a little to demanding (see also https://github.com/sneumann/xcms/issues/534). Would be nice to provide the MassBank data in addition as an SQLite database. Thi…
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There are cases that people use the "non-existing" amino acids to encode modified amino acids in certain peptides, such as SILAC-labeled Pierce iRT peptides: https://github.com/Nesvilab/FragPipe/issue…
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I like to run `planemo test A.xml B.xml ...` because sometimes the tool directory is not clean, i.e. there is a lot of other things besides tools, test-data, etc.
Used to work until 0.62.1.
N…