-
I construct my pangenome and I tried to draw spots but I got an unexcepted error.
```
2023-02-09 10:33:06 draw_spot.py:l656 INFO Drawing 314 spots
2023-02-09 10:33:06 draw_spot.py:l565 INFO …
-
Hi there I have two VCF files for HG002 benchmarked with `hap.py`
- one has been generated from a pangenome graph using GRCh38 as a reference
- the other is the product of a graph sub-sampling whi…
-
Hi odgi team,
I have been playing and getting into the world of pangenomes for an ongoing research project. Part of the way we are trying to analyze our pangenome is by looking at shared nodes amon…
-
**1. What were you trying to do?**
I am trying to generate vg graphs using [GRCH37](ftp.1000genomes.ebi.ac.uk/vol1/ftp/technical/reference/phase2_reference_assembly_sequence/hs37d5.fa.gz) Refere…
-
Hello developers!
I was building a 15 genome pan-genome using minigraph-cactus and got the vcf file without a problem.
Here, I want to add short sequenced data from 500 individuals to our vcf file …
-
Hello,
I'm confused because of the following sentence in the documentation part Genomic context:
>From version 1.2.45, it is possible to search genomic context in a pangenome graph using PPanGGO…
-
Dear developer:
We had a very difficult problem recently, and as we know, minigraph-cactus is very valuable in pan-genome construction, but we found it very difficult to use in pan-transcriptome.
…
-
The two graphs from Fig 3 in episode 5, the one above and the one below, are described as core genome.
There must be a mistake since there should be core genome graph and a pangenome graph.
-
- Neo4j version: 5.2.0 and 5.3.0 Enterprise Clustered-Mode
- Operating system: Kubernetes, Helm Chart, Ubuntu 22
- API/Driver: Python driver v.5.2.0/v5.3.0
Hello,
I am running in this strange b…
-
**1. What were you trying to do?**
I am trying to index a GFA graph file (a chromosome) derived from PGGB.
**2. What did you want to happen?**
index done.
**3. What actually happened?**
e…