-
Hi, my name is Luis and I was wondering if there is a way of training an additional classifier that takes into account an image that has been cell-type classified. For example, if an image of a tumour…
-
Dear @petebankhead
Hope this finds you well. I am back again for your input on an issue.
First, let me tell briefly about **my task with the QuPath**. I stained slides of different mouse tissue…
-
Hello, we are using VEP in GDC-like pipeline after VarScan step.
This is our VEP launch command:
`/soft/ensembl-vep-95/vep --fork 14 --input_file Test.all.all.hc.fp-filtered-D3.Somatic.vcf --format …
-
Dear beifang,
Sorry liberty to disturb. I'm hongsen qu and a new for MSIsenor from China. Recently I have install MSIsenor and run the command "bash run.sh" for test，then I got the MSI score 10…
-
Hello!
I am a pathologist and a doctoral student from Estonia. My research field are stromal changes in cancer. I ve been using blinding so far to achieve an impersonal result. Recently appeared an o…
-
Hi,
I am using the classifier to detect positive and negative cells in a tumor, I am measuring them in three different areas: 500µm outside of the tumor (green), the whole tumor (blue) and tumor c…
-
We should have a paragraph on prior applications of tHMMs since there are one or two. I would also mention linkage analysis here, and analysis of incomplete penetrance in family trees.
-
Hi Brad, I see that Titancna now complain about cytoband with hg19/GRCh37 .
Thanks!
Alessandro
Error in cytoband[, "chrom"] : incorrect number of dimensions
[2018-10-26T01:17Z] lt14: Optimal …
-
Hey Dario,
I have come across some memory issues with my cnv_facets jobs. They occur at different parts of the analysis. For eg...
1)
```
Read 39769793 rows and 6 (of 12) columns from 1.249 …
-
Hi,
I've read your paper and I'm wondering why RetinaNet works better than MaskRCNN for lung lesion detection with 2D or 2Dc inputs. I think in most cases, a two-stage detector should be better than …