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Do genomes include...
- splicing during start/stop codons
- alternative splice sites
- any dinucleotide bias at transcription start site
- ...
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It's currently not possible to cross-build images for a foreign architecture. Using `nix2container` on `nixpkgs` with a foreign `crossSystem` will attempt to build the `nix2container-bin` and `jq` bin…
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Is splicing already possible in LND? Have only heard of CLN, LDK and Eclair which have it built in but don't know if they also have what I need for my service (lockable wallet - on LND via encrypted m…
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I tested SPLASH with a couple of samples, however I am not sure that I understand the correct way to proceed when having an specific experimental design. In my case, I have 2 types of samples, one set…
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would be epic
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Hi there,
Thanks for the wonderful new tools! I have a question about the output of the script [new_annotator_with_skipping.py](https://github.com/landau-lab/ONT-sc-splice/blob/main/junction_annota…
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Hello,
I am using briekit-events to extract splicing events from the human gencode v25 annotation file in gff3 format, which has over 55k genes. However, the output file has alternative splicing ev…
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Top to bottom workflow with all the steps for the projects
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I realized that I will be working with a very large number of samples representing data from over 20 conditions. The paper mentions - "PsiCLASS is designed to leverage the gene information across samp…
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Hello,
As I understand it, the calculation of adjusted p-value in rmats is done for each type of alternative splicing such as ES or IR. I'm wondering why the adjusted p-value is calculated separate…