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Helllo guys, I am trying to run annovartable using this code: annovar/table_annovar.pl annovar/output.avinput annovar/AT_refGeneMrna.fasta annovar/AT_refGeneMrna.txt -out myanno -remove -protocol …
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Dear Prof. Wang,
I think I find a bug in ANNOVAR.
I created a demo ANNOVAR db with the following demo data.
```
10 100035604 100035605 0
10 100045685 100045686 …
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Dear Prof. Wang,
Can you share me the ANNOVAR index perl script? I downloaded hg38 CADD annotation, but without annovar index. I want to create the index with ANNOVAR index perl script so that I c…
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How do I run this tool on an pre-annotated VCF? The annotation was done with a different tool and not ANNOVAR. I set the parameter "skip_annovar" to TRUE, however, I end up getting
```
ERROR: The…
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I am having the same issue as described in #61 . Is the site currently down?
The mentioned #61 issue above reads:
> I am trying to download a database and I get the following:
NOTICE: Web-base…
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Dear Dr. Wang,
the following command not works:
`annotate_variation.pl -downdb -buildver hg38 -webfrom annovar snp135NonFlagged ~/hpc/tools/annovar/humandb/`
while buildver hg19 work perfec…
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Hello,
According to [this post by GATK](https://gatk.broadinstitute.org/hc/en-us/articles/360035531912-Spanning-or-overlapping-deletions-allele-), ```*``` in ALT field can indicate that the variant…
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最後の最後でうまく流れません。
./310_run-table-annovar.shを入力すると
gunzip: DRR006760.all.pass.vcf.gz: unexpected end of file
gunzip: DRR006760.all.pass.vcf.gz: uncompress failed
NOTICE: Finished reading 2894 lines …
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Hi,
I used annovar with below command to annotate the result of pbsv:
```
/share/home/annovar/convert2annovar.pl -format vcf4 sample.vcf >sample.annovar
/share/home/annovar/annotate_variation.pl…
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Hello ,
I am trying to run structural variants annotations using annovar. Do annovar support it? If so can u help me with how to toggle structural variants input so the algorithm can get that?
R…