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### Question
First of all, thank you for this resource. This is more of a curiosity. CRAFT v4 contains cell type information as well. Did you guys try for Named Entity Detection in Hunflair? If yes, …
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We should include both 'naive' and highly mutated datasets, so that the performance of tools can be tested uinder both conditions
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In the paper, "Functional assessment of cell entry and receptor usage for lineage B beta-coronaviruses" The researchers hypothesis is that a 2nd host must have been involved in the jump to humans. So…
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Here are a set of new terms in OBO format for human IgA and IgD immunoglobulin protein complexes, 17 terms in all. The terms are linked to and modeled on the GO protein complexes for these immunoglob…
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Hey Denes,
Recently, CellPhoneDB got bumped to v5, and the data is stored here:
https://github.com/ventolab/cellphonedb-data/tree/master
Seems to have changed format from:
https://github.com/s…
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### Background
We've recently been facing the issue of not knowing what (annotation extension) relations to use between 'cell-cell adhesion' GO terms (and its descendants) and cell type CL ontology…
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I am running scanpy anndata through CellChat and my code works except for when it gets to computing the communication probability. This is the error I get. ad ad_object # access normalized data matr…
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IGSF members are in a flat hierarchy:
....is\_a PR:000000001 \! protein
.....is\_a PR:000001089 \! immunoglobulin superfamily member 2 \*\*\*
.....is\_a PR:000001090 \! immunoglobulin superfamil…
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GO:0009610 response to symbiotic fungus
descendents:
GO:0019732 antifungal humoral response | is_a
-- | --
GO:0009817 defense response to fungus, incompatible interaction | is_a
GO…