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Can anyone tell me why I am getting this error and how to fix it?
`/projects/nanopore-working/niki/bin/anaconda3/lib/python3.6/importlib/_bootstrap.py:219: RuntimeWarning: This module has been dep…
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When I was at Waterloo, I moved my code from BioPython to [scikit-bio](https://scikit.bio). I found it much more performant because it uses C-based data structures like Numpy under the hood (the same …
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Is this line trying to sort sequences before computing an MD5? Should the operator be 'cmp' ?
https://github.com/kbase/KBaseFBAModeling/blob/master/lib/Bio/KBase/fbaModelServices/Impl.pm#L2457
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`janitor.biology` could do with a `to_fasta` function, I think. The intent here would be to conveniently export a dataframe of sequences as a FASTA file, using one column as the fasta header.
straw…
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(Assuming that it doesn't) it would be nice if LAPIS could support returning FASTAs with "descriptions", e.g. https://www.ncbi.nlm.nih.gov/nuccore/NC_045512.2?report=fasta has both an accession and th…
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With the removal of Bio.Alphabet ... did the great **Bio.Alphabet.Reduced** module containing the protein alphabets (Murphy4, Murphy10, Murphy8, Murphy4, HPmodel and PC5) also get kicked out?
I…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_imp…
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Author Name: **Florent Angly** (@fangly)
Original Redmine Issue: 2384, https://redmine.open-bio.org/issues/2384
Original Date: 2007-10-18
Original Assignee: Bioperl Guts
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Some sequences prod…
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Checking out the steps ahead to align the trimmed sequences to an annotated genome using HISAT-2. Here are some resources I'm following:
- Steven Roberts FISH 546 course info: https://sr320.github.…
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Hello,
I have been using this pipeline for a while (thanks to the developers!) and I am very used to its scripts but this time I cannot get around this error. When running `concat_alignments.py` fo…