rotary-genomics spokewrench issues

rotary-genomics / spokewrench

Toolkit for manipulating circular DNA sequence elements

BSD 3-Clause "New" or "Revised" License

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Add --keep_temp_files option

#21 jmtsuji closed 1 week ago
2
Sync stitch module with develop

#20 jmtsuji closed 1 month ago
0
Update spokewrench installation

#19 jmtsuji closed 1 month ago
2
Update install

#18 jmtsuji closed 2 months ago
1
Check multiple Python versions in installation test

#17 jmtsuji opened 6 months ago
0
Add basic installation test

#16 jmtsuji closed 6 months ago
8
Initial end-to-end tests via GitHub Actions

#15 jmtsuji closed 6 months ago
8
Change name of rotary-utils

#14 jmtsuji closed 7 months ago
1
Update code of StitchDirectories to use Python properties.

#13 LeeBergstrand closed 7 months ago
1
Code refactoring

#12 jmtsuji closed 7 months ago
0
Add support for end repair of small circular contigs. The `flye_end_repair.sh` script assumes the contig is at least 100 kb in length at the moment, and in a hard-coded way.

#11 LeeBergstrand closed 7 months ago
2
Implement a function that calls a chain of subcommands piped into each other.

#7 LeeBergstrand opened 7 months ago
6
Develop refactor

#6 LeeBergstrand closed 7 months ago
13
Basic working version of rotate module

#5 jmtsuji closed 7 months ago
0
Replace Biopython with ScikitBio?

#4 LeeBergstrand opened 7 months ago
3
Update rotate module branch

#3 jmtsuji closed 7 months ago
0
Centralize code

#2 jmtsuji closed 7 months ago
1
Basic working version of rotary-utils

#1 jmtsuji closed 7 months ago
8
Replace circlator merge with internal code

#10 jmtsuji opened 1 year ago
3
Roadmap for `repair.py`

#8 jmtsuji opened 1 year ago
2
Ensure proper polishing of end-repaired circular contigs

#9 jmtsuji opened 2 years ago
3