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Hi JuliaComputing,
My name's Ben and I work on BioJulia, right now my efforts are focused on getting Evolutionary Genetics and Phylogenetics modules for Bio.jl. The phylogenetic module is getting wri…
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Hi all,
@Ward9250 and I had a chat about license choices on gitter. As we move to independent packages, maintainers may want to vary licenses from the default, very liberal MIT license. There are m…
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Based on [`biojs2galaxy](https://github.com/biojs/biojs2galaxy) we could create a similar approach for IPython/Jupyter notebooks.
## Infos about IPython
Widgets in iPython are described [here](http:…
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From Jakob on slack:
> It would be nice if, during your work on the docs, you wrote a list of all the packages that could use some work
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Have each of the haplink commands read from standard input and write to standard output unless appropriate file flags are called.
## ~~Additional~~ Removed Arguments
### `haplink variants`
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Dear,
after instaling Julia, adding Julia and jdk1.8.0/bin to the PATH, and typing ]add VariantVisualization in Julia, I got this error message:
```
Installing known registries into `~/.julia`
…
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Description: I propose adding a new function molecular_weight() to the BioSequences package that calculates the average or monoisotopic molecular weight of a protein or nucleic acid sequence. The func…
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I think we would do the usability of BioJulia a lot of favours if we made it easier to use the file format packages to do the processing of HTS files a la seqtk, samtools etc.
It's currently not as…
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While optimizing some code (https://github.com/BioJulia/IntervalTrees.jl/pull/46) I found that storing some fields as `Nullable` rather than `Union{Nothing,...}` made assignment to those fields signif…
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I'm getting the following inexact error on master when reading a big archive (20GB compressed size with ~4 compression ratio). The archive seems fine when I extract it with gunzip.
```
[11] — fill…