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Hi,
When I run or rerun speciesprimer (on a docker container with 15.51 gb RAM allocated to it) a single results file is not successfully created. I can not determine from the logs what the problem…
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Hello,
I want to use `hs-blastn` to search in a genome with size **~2 GB** (i.e., the maize genome), the indexing was not fast but no error reported. When I perform blastn searches with `hs-blastn`…
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This would be a really useful enhancement. Currently it appears to ignore the -M flag when used with "-p 0".
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Hi there, when i use SMTa for microbe analysis in visium data, i noticed that the nt database is too large and time consuming.
![114027](https://github.com/affinis/SMTa/assets/36031820/17f79c24-88b0-…
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New BLAST 2.8.1+ prints the above warning.
This happens when the user database has less than 5 sequences in it.
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Hi,
I need to run TE-Aid in parallel but it causes errors because of using shared resources.
I tried this command (to copy TE-Aid to a temp file for each process so it doesn't use the same databa…
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Hello,
I'm trying to run hs-blastn (as a part of another program called NanoVar). I get an error when I run hs-blastn align: Too many query and subject values:
This is the command I used:
hs-b…
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Hi,
I was running FATE following the manual using: fate.pl search -h blastn -g genewise genome.fa in.fa >out.bed. There were fate_search_blastn.out, nucl, and prot. However, out.bed was empty.
I w…
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Current build copies blast executables to distribution and these end with the ".exe" extension. On a mac, this prevents the editor from running blast since it only looks for ".exe" for windows operat…
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Hi, as the web server for VIRIDIC is down (has been for >48 h) I have tried switching to using the Shiny App in RStudio. After successfully installing all required packages, I cannot seem to run the a…