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Hello,
I am currently trying to use kassandra locally and have followed your tutorial (Python notebook) to train the full model, using "all_models_expr.tsv" (this is actually a csv file, by the way…
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**Project:**
Characterizing the transcriptome of individual cells is fundamental to understanding complex biological systems. Recent developments in single cell RNA sequencing (scRNA-seq) technologies…
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As we are evaluating integration methods and testing subsets of datasets, it would be helpful to see the exact breakdown of ScPCA projects and how much of each disease, 10X platform, etc. are included…
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Error in strsplit(lineseg.df$end_points, "-") : non-character argument
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OWL has a handful of ["profiles"](https://www.w3.org/TR/owl2-profiles/) that specify subsets of the language. In OBO we tend to use the EL and DL profiles. The DL profile has most OWL features. The EL…
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Please keep this checklist for curation of a new study.
- [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study (one issue per study) and copy t…
inodb updated
2 years ago
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Hello,
Thank you for your hard work for Kassandra. It's a nice and useful tool for cell fraction detection from bulk RNAseq data. After git clone https://github.com/BostonGene/Kassandra/ and running…
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**Description of the task:**
@hannes-ucsc pointed out that these 4 datasets have at least 1 specimen which was the sequencing input.
https://data.humancellatlas.org/explore/projects/6c040a93…
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Hi, I am testing the meffil workflow with a publicly available dataset to see if I get the same results. But, I am unable to find any DMPs. I was able to reproduce the results using minfi but not usin…