dancoster DrugLab issues

dancoster / DrugLab

Repository for the drug<>lab pair

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Manual evaluation

#62 dancoster opened 2 months ago
0
Improve drug_forward function

#61 dancoster opened 2 months ago
1
Bug - missing delta_i_m_b in m_labs

#60 dancoster opened 3 months ago
0
bug - ratio = 1

#59 dancoster opened 3 months ago
0
Move to config minimal time before/after med adminstration

#58 dancoster opened 3 months ago
0
Estimate effect of two dosages of same

#57 dancoster opened 3 months ago
0
Feature/redesign add json config

#56 rfeinsod opened 3 months ago
0
Generate function that take into consideration multiplte types of drugs that impact the same lab

#55 dancoster opened 3 months ago
0
Add weighted T-test

#54 dancoster opened 3 months ago
9
Fix K-Fold validation

#53 dancoster opened 4 months ago
1
Submit MD proposal

#52 dancoster opened 4 months ago
0
MIMIC - Evaluate Drug Forward Prediction

#51 dancoster opened 4 months ago
18
Varitation in drug admistration parameter

#50 dancoster opened 5 months ago
22
New b

#49 dancoster closed 5 months ago
0
Explore how can we match medications between HiRID and MIMIC (ATC5).

#48 dancoster opened 6 months ago
0
HiRID - implement prediction models.

#47 dancoster opened 6 months ago
0
Execute 'all administrations' (not only first one)

#46 dancoster opened 6 months ago
1
HiRID - Generate a 'pvals_ratio_sampled.csv' table based on 1st and 2nd medications

#45 dancoster opened 6 months ago
2
Apply to Salzburg ICU data in Physionet

#44 dancoster closed 1 year ago
2
Tables

#43 dancoster opened 1 year ago
28
Merge - 'Ratio' Paired T-test

#42 dancoster opened 1 year ago
12
HiRiD - Generate ratio plots for window before = 4h, after=6h

#41 dancoster opened 1 year ago
8
Merge - Add per each observation of drug<>lab its dosage

#40 dancoster opened 1 year ago
2
Merge - HiRiD: Add 'extract_med_per_lab' and 'add_med_adminstrations_cols' functions.

#39 dancoster opened 1 year ago
6
Merge - Create mapping of drugs between hirid and mimic

#38 dancoster opened 1 year ago
3
HiRiD: Statistical description for itemids for each lab test

#37 dancoster opened 1 year ago
0
Create Dataset with longitudinal observation from HiRiD

#36 dancoster opened 1 year ago
18
Generate MIMIC Discovery Analysis results (with mean+SD)

#35 dancoster opened 1 year ago
8
Merge - Add to discovery analysis option to filter on minimal number of patients

#34 dancoster opened 1 year ago
1
Merge - HiRid - Take only top 300 hundred medications

#33 PavanReddy28 opened 1 year ago
1
Generate Data HiRid

#32 dancoster opened 1 year ago
1
Add to results tables of discovery analysis columns of Mean+SD (separated cols) of Before and After per each lab [part of PR #25]

#31 dancoster opened 1 year ago
1
Questions to answer: When medication effect starts? How long does the medication effect last?

#30 dancoster opened 1 year ago
0
HiRID - Run discovery analysis

#29 dancoster opened 1 year ago
7
Merge - Generate data points from all the administrations of a drug (not only the first one)

#28 dancoster opened 1 year ago
3
Masking Generator

#27 PavanReddy28 opened 1 year ago
0
Prepare data for presentation

#26 PavanReddy28 opened 1 year ago
0
feat(Discovary Analysis): Added support to perform discovary analysis

#25 PavanReddy28 closed 1 year ago
2
Run MIMIC Extract Models

#24 dancoster opened 1 year ago
1
Mapping Medications item_id into one medicaion

#23 dancoster opened 1 year ago
1
Filter 'error' medications (MIMIC)

#22 dancoster opened 1 year ago
4
Add drug plot function (from old notebook of Dan)

#21 dancoster opened 1 year ago
1
Running discovery analysis on MIMIC [part of PR #25]

#20 dancoster closed 1 year ago
0
Add AUTOMATIC_MAPPING (Pulling the top K most common functions). [part of PR #25]

#19 dancoster closed 1 year ago
0
Add medication mapping to cosntants

#18 PavanReddy28 opened 1 year ago
0
Modify Lab mappings in constants [part of PR #25]

#17 PavanReddy28 opened 1 year ago
1
Added Parser and Modeling code as local modules

#16 PavanReddy28 closed 1 year ago
1
Renaming notebook analysis folder for mimic notebooks

#15 PavanReddy28 closed 1 year ago
0
Notebooks and merge dev

#14 PavanReddy28 closed 1 year ago
0
Add to the pipeline the creation of the files mec_vectorized_1 and mec_vectorized_2

#13 dancoster opened 1 year ago
2