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perishky
/
meffil
Efficient algorithms for analyzing DNA methylation data.
Artistic License 2.0
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Issue with meffil.ewas model
#60
AshutoshTomar
opened
2 months ago
0
usage of cell type output
#59
rkb965
opened
5 months ago
0
add new saliva reference
#58
epzjlm
opened
5 months ago
0
Issue in meffil:::guess.featureset
#57
NLlonga
opened
7 months ago
5
meffil.qc.summary Error and Warning
#56
roxUCL
opened
9 months ago
4
qc.summary warning about scale guides
#55
lorbaer
closed
9 months ago
1
warning message from meffil.ewas.summary()
#54
lovelymaoqin
opened
1 year ago
0
ewas.parameters <- meffil.ewas.parameters(sig.threshold=1e-20, max.plots=5)
#53
lovelymaoqin
opened
1 year ago
0
meffil.normalize.dataset() threw me an error
#52
lovelymaoqin
opened
1 year ago
4
Normalization function creates many NAs
#51
rfael0cm
opened
1 year ago
4
450k, epicv1, and epicv2
#50
RustTurakulov
closed
1 year ago
0
meffil.normalize.samples function needs raw values
#49
rfael0cm
closed
1 year ago
2
EPIC v2 multiple `IlmnID` per CpG `Name` behavior
#48
hhp94
closed
1 year ago
5
meffil.ewas.summary with GDS
#47
feichel
closed
1 year ago
2
added gse167998 celltype reference
#46
thomasbattram
closed
1 year ago
0
Creating chunks for parallelization using `meffil.normalize.samples()` error
#45
hhp94
closed
1 year ago
2
Checks for sample swap detection
#44
sarasaezALS
closed
1 year ago
1
DMPs vs DMRs
#43
neuromik
closed
1 year ago
1
ewas / champ output comparison
#42
iskandari
closed
1 year ago
1
Guidance on plink step in QC
#41
iskandari
closed
1 year ago
2
Length > 1 error on R 4.2
#40
hhp94
closed
2 years ago
4
qc.objects - annotation
#39
laurahf
closed
2 years ago
2
add new cell type reference
#38
perishky
opened
2 years ago
1
meffil.ewas.summary coerce error
#37
ivangong24
opened
2 years ago
0
Start with methlyation level table
#36
albert-ying
closed
2 years ago
3
Testing more than one phenotype
#35
Lidija0710
opened
2 years ago
0
Cell composition
#34
SofyaMa
closed
2 years ago
1
dimnames error in meffil.normalize.samples()
#33
tomkuipers1402
closed
3 years ago
5
Report variance of normalized betas principal components
#32
yocra3
closed
2 years ago
5
Normalize a subset of samples
#31
yocra3
closed
3 years ago
2
Figure sub-folder in the EWAS report
#30
Fathzadehm
closed
3 years ago
1
Downloading of normalized Methylation values in simple .txt format
#29
CornelisB
closed
3 years ago
4
Extracting genotypes from Methylation data
#28
CornelisB
closed
4 years ago
3
How to make sure meffil matches the newly added EPIC b5 manifest
#27
ox852
closed
3 years ago
1
Problem generating normalized beta value for EPIC array data
#26
ox852
closed
4 years ago
3
normalized control probe values
#25
dorks81
closed
3 years ago
1
Possible to include all minfi's cell type references in the meffil.estimate.cell.counts.from.betas function?
#24
Lei-Guo
closed
3 years ago
3
genotype check related samples
#23
epzjlm
closed
2 years ago
0
mysterious error trying to estimate cell counts from betas - please help?
#22
flopflip
closed
4 years ago
0
fix sample sheet create columns
#21
uxuelazkano
opened
4 years ago
2
Meffil - coding of unknown phenotypes
#20
janful
opened
5 years ago
0
27k Support
#19
jlevy44
closed
4 years ago
4
new cell type reference
#18
jromanowska
closed
5 years ago
2
load-epic-manifest
#17
perishky
closed
4 years ago
1
Workflow validation
#16
royfrancis
opened
5 years ago
2
Version conflicts with CopyNumber450k
#15
jakoberr
closed
5 years ago
4
EWAS: Multiple testing correction
#14
royfrancis
closed
5 years ago
1
EWAS: fixed vs random and multiple batch effects
#13
royfrancis
closed
5 years ago
1
Import/Convert minfi objects?
#12
royfrancis
closed
5 years ago
2
Negative estimated cell counts?
#11
jnguofa
closed
5 years ago
2
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