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Clade Citation:
• Is this is for previous application of the name to a clade approximating the one to which it is being tied, or is it for the formal definition of the name (the publication for…
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### Current Behavior
Augur export converts literals to lower case in its stderr output - which is probably not what we want
### Expected behavior
Literals are output as they are, not changing cas…
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Hi!
**Context**: running `make.prosse` on this phylogeny [phylo_incipient.tree.zip](https://github.com/user-attachments/files/15903207/phylo_incipient.tree.zip)
**Error**:
```
Error in edge[ma…
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at order level and family level
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### Author(s) of proposal
Li-Bing Zhang, Xin-Mao Zhou
### Name of taxon
Calligrammitis, Devolia, Glabrigrammitis
### Rank of taxon
Genus
### Approximate number of species affected
5
### Descri…
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I tried
` ./newick_v1.0.1429_linux in.treefile -outGroup outgroup -output rooted.newick
Invalid command line
Expected -option_name or --option_name, got 'in.treefile'
`
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Hello Lin.
I wanted to thank you for making MitoZ. It has certainly helped me out quite a lot and I am thankful.
I have a query to ask however. I am using Docker to run my analysis as it takes ca…
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[The paper](https://www.sciencedirect.com/science/article/pii/S0042682223001733) mainly describes this tool was intended for H5N1. Is this tool appropriate to use on other flu subtypes?
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The sequence TRM345 (NCBI GenBank: PP852943) in the current Mpox build is highly divergent, with low coverage and quality. Suggesting its removal from the mpox build. Might also be worth considering a…
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Hi
In you presentation "Statistical analysis for metagenomic data" on June 6-7, 2016, you have mentioned that
> Note: better to use metaphlan2 option:
> -t clade_profiles
> to generate normaliz…